PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Dca41817.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
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Family | MYB | ||||||||
Protein Properties | Length: 87aa MW: 10347.9 Da PI: 10.3583 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.2 | 8.1e-18 | 1 | 45 | 4 | 48 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 WT eEd ll ++++++G g+W++++ + g++R++k+c++rw +yl Dca41817.1 1 WTDEEDNLLRNCIEKHGEGNWHRVPIRAGLNRCRKSCRLRWMNYL 45 *******************************************97 PP | |||||||
2 | Myb_DNA-binding | 33.8 | 7.6e-11 | 51 | 87 | 1 | 39 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkq 39 rg + ++E +l+++++k+lG++ W++Ia +++ gRt+++ Dca41817.1 51 RGQFNEDEVDLIIRLHKLLGNR-WSLIAGRIP-GRTAND 87 899*******************.*********.****96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 7.0E-11 | 1 | 47 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.47E-11 | 1 | 45 | No hit | No description |
Pfam | PF00249 | 1.9E-16 | 1 | 45 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.7E-22 | 1 | 52 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.37E-25 | 1 | 86 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 25.993 | 1 | 49 | IPR017930 | Myb domain |
SMART | SM00717 | 1.1 | 50 | 87 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 14.565 | 50 | 87 | IPR017930 | Myb domain |
Pfam | PF00249 | 1.3E-9 | 51 | 87 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.8E-16 | 53 | 87 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.95E-6 | 54 | 87 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 87 aa Download sequence Send to blast |
WTDEEDNLLR NCIEKHGEGN WHRVPIRAGL NRCRKSCRLR WMNYLKPNIK RGQFNEDEVD 60 LIIRLHKLLG NRWSLIAGRI PGRTAND |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-16 | 1 | 86 | 10 | 94 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021811965.1 | 6e-50 | LOW QUALITY PROTEIN: transcription factor MYB114-like | ||||
Swissprot | Q9FNV9 | 5e-47 | MY113_ARATH; Transcription factor MYB113 | ||||
TrEMBL | A0A142D8G2 | 4e-50 | A0A142D8G2_9CARY; Myb transcription factor 6 | ||||
STRING | EMJ17729 | 3e-49 | (Prunus persica) | ||||
STRING | XP_010034461.1 | 3e-49 | (Eucalyptus grandis) | ||||
STRING | XP_010062250.1 | 5e-49 | (Eucalyptus grandis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66370.1 | 2e-49 | myb domain protein 113 |
Publications ? help Back to Top | |||
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