PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca41701.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family C3H
Protein Properties Length: 1133aa    MW: 124174 Da    PI: 9.1959
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca41701.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.91.7e-08564584525
                 --SGGGGTS--TTTTT-SS-S CS
     zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                 +C+++a tG+C++Gd+C F+H
  Dca41701.1 564 PCNTYADTGFCSRGDSCLFSH 584
                 7******************** PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.779505532IPR000571Zinc finger, CCCH-type
SMARTSM003560.36505531IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.3E-5507530IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.915534561IPR000571Zinc finger, CCCH-type
SMARTSM003560.0017534560IPR000571Zinc finger, CCCH-type
SMARTSM003560.033562586IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.68E-5563585IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.324564587IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-5564584IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-4564585IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1133 aa     Download sequence    Send to blast
MSKRPKVTEE QRKEFREFFG IPKDFGLKPI PCNTFIELVK IYATLPDQQN NPFAKYIDDP  60
DYAECYPWPQ WTTTGFDRLW DEISDEDGTR FNPLRKRNTN GSNVRVGESS GVEVGESSCQ  120
KENNSDPTSG ASCKDDVLNG PEMAIEQPGA SQGSEILDKI ANNEDNVREN LSSIQRILMD  180
ESDDADMLQL LDKDADLGRA CDFGSILGMD KSSDESLTAT KRKDVEGNQS TIERNVGIHQ  240
SPKSVDTGVS SSPEFVNQKV KRLKNVRPVD TRLCVQNVQQ ELTDIGGLTS MGNEIEKVGE  300
FTSGKLEDKL GERNRIIVSG LRALSKKPKV KNGKVSEKNV ESRKHNHSHV EGEAYDNMRL  360
GGDHLMARGK TVKQNAPTIS RSPSTIEDQG NLPTGRVRLR YTREQLLNYG KVNVYMACRV  420
VVTSTAFVPE HIKKAVQEIG VELHEKHQIS AAFNAADSSI LKKKRGGSLS EAKKEKKKIK  480
KRKKRAELNR KLGVKRLKLQ PIVKAKVVQH CRHYLMGRCY EGEKCKFSHD VVPLTKSKPC  540
CHFARQACMK GDECPYDHEL SKYPCNTYAD TGFCSRGDSC LFSHKIPVKA ASEPSSVPLK  600
CDSTSADKYD VSKSKQQADT IVPSTSGKST PTNLKEKLAT TTIKPAKRPK GLSFLSSGTC  660
QSDDSVQPEE SAMCQHSNNT TGTNVQPNMV AEAVPNTRQT PRNIPGSGAH GINFSSFEKS  720
RFDGYRSSNQ PQLSTHYREY SSRDNSSGDP ILNYALKYQL NHTSEAFDSS ELPSPTPTPE  780
RVPNFSAMYT ETPTMIPGTN FDLSEFLKGI PSATLTPTRI PTPTPAPERD ANVSEIPRVP  840
TSIPESALNI SGMSKGMGPT IERSLNVSEM SKGTTPIAER ALKLSEFGKA TSTVTLTSER  900
ALNVSEISKG TAPVAERALK PPVLYKGTPT VTKTPERALN VSEVSKGPTV MAERAHKLPE  960
MLTGTPTTTP TPERSLNVSE ISKGSTMIPA IPAPTASATQ ERSRNLAEML KDALTQAKVK  1020
RTSVSSSDVP MSCISRGKSA SVISTEQEKG NINASEKLLK ADLPVKKSVN NTQRALQSAL  1080
AFASKHESGI KMNSNAAAKE NNLNGGTSFE QSEPSQASKI LQFLNRQGDK ENK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1462484KKRGGSLSEAKKEKKKIKKRKKR
2476484KKIKKRKKR
3479483KKRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-