PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Dca41701.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
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Family | C3H | ||||||||
Protein Properties | Length: 1133aa MW: 124174 Da PI: 9.1959 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 25.9 | 1.7e-08 | 564 | 584 | 5 | 25 |
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 +C+++a tG+C++Gd+C F+H Dca41701.1 564 PCNTYADTGFCSRGDSCLFSH 584 7******************** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 13.779 | 505 | 532 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.36 | 505 | 531 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.3E-5 | 507 | 530 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.915 | 534 | 561 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0017 | 534 | 560 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.033 | 562 | 586 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 9.68E-5 | 563 | 585 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.324 | 564 | 587 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.3E-5 | 564 | 584 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.0E-4 | 564 | 585 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1133 aa Download sequence Send to blast |
MSKRPKVTEE QRKEFREFFG IPKDFGLKPI PCNTFIELVK IYATLPDQQN NPFAKYIDDP 60 DYAECYPWPQ WTTTGFDRLW DEISDEDGTR FNPLRKRNTN GSNVRVGESS GVEVGESSCQ 120 KENNSDPTSG ASCKDDVLNG PEMAIEQPGA SQGSEILDKI ANNEDNVREN LSSIQRILMD 180 ESDDADMLQL LDKDADLGRA CDFGSILGMD KSSDESLTAT KRKDVEGNQS TIERNVGIHQ 240 SPKSVDTGVS SSPEFVNQKV KRLKNVRPVD TRLCVQNVQQ ELTDIGGLTS MGNEIEKVGE 300 FTSGKLEDKL GERNRIIVSG LRALSKKPKV KNGKVSEKNV ESRKHNHSHV EGEAYDNMRL 360 GGDHLMARGK TVKQNAPTIS RSPSTIEDQG NLPTGRVRLR YTREQLLNYG KVNVYMACRV 420 VVTSTAFVPE HIKKAVQEIG VELHEKHQIS AAFNAADSSI LKKKRGGSLS EAKKEKKKIK 480 KRKKRAELNR KLGVKRLKLQ PIVKAKVVQH CRHYLMGRCY EGEKCKFSHD VVPLTKSKPC 540 CHFARQACMK GDECPYDHEL SKYPCNTYAD TGFCSRGDSC LFSHKIPVKA ASEPSSVPLK 600 CDSTSADKYD VSKSKQQADT IVPSTSGKST PTNLKEKLAT TTIKPAKRPK GLSFLSSGTC 660 QSDDSVQPEE SAMCQHSNNT TGTNVQPNMV AEAVPNTRQT PRNIPGSGAH GINFSSFEKS 720 RFDGYRSSNQ PQLSTHYREY SSRDNSSGDP ILNYALKYQL NHTSEAFDSS ELPSPTPTPE 780 RVPNFSAMYT ETPTMIPGTN FDLSEFLKGI PSATLTPTRI PTPTPAPERD ANVSEIPRVP 840 TSIPESALNI SGMSKGMGPT IERSLNVSEM SKGTTPIAER ALKLSEFGKA TSTVTLTSER 900 ALNVSEISKG TAPVAERALK PPVLYKGTPT VTKTPERALN VSEVSKGPTV MAERAHKLPE 960 MLTGTPTTTP TPERSLNVSE ISKGSTMIPA IPAPTASATQ ERSRNLAEML KDALTQAKVK 1020 RTSVSSSDVP MSCISRGKSA SVISTEQEKG NINASEKLLK ADLPVKKSVN NTQRALQSAL 1080 AFASKHESGI KMNSNAAAKE NNLNGGTSFE QSEPSQASKI LQFLNRQGDK ENK |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 462 | 484 | KKRGGSLSEAKKEKKKIKKRKKR |
2 | 476 | 484 | KKIKKRKKR |
3 | 479 | 483 | KKRKK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |