PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca41643.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family MYB
Protein Properties Length: 442aa    MW: 48399.3 Da    PI: 6.5091
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca41643.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.51.5e-184085147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     rg+W++eEd +l ++v+++G+++W +Iar ++ gR++k+c++rw + 
       Dca41643.1 40 RGPWSPEEDAILTELVTKFGPKNWGLIARGIP-GRSGKSCRLRWCNQ 85
                     89******************************.***********985 PP
2Myb_DNA-binding50.64.6e-1692136147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r+++T+eEd +++  +  +G++ W++Ia+ ++ gRt++ +k++w++ 
       Dca41643.1  92 RKPFTEEEDHIIISSHVIHGNK-WAAIAKLLP-GRTDNAIKNHWNST 136
                      789*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.4173590IPR017930Myb domain
SuperFamilySSF466899.73E-3138133IPR009057Homeodomain-like
SMARTSM007175.2E-163988IPR001005SANT/Myb domain
PfamPF002497.1E-174085IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.4E-254193IPR009057Homeodomain-like
CDDcd001676.75E-154284No hitNo description
SMARTSM007171.6E-1391139IPR001005SANT/Myb domain
PfamPF002492.7E-1492136IPR001005SANT/Myb domain
PROSITE profilePS5129418.67292141IPR017930Myb domain
CDDcd001677.97E-1194137No hitNo description
Gene3DG3DSA:1.10.10.604.3E-2294140IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
MTTKDPSNDL TNPNPADVGP TTTAAPPPPP PSTRRGPRVR GPWSPEEDAI LTELVTKFGP  60
KNWGLIARGI PGRSGKSCRL RWCNQLDPCV MRKPFTEEED HIIISSHVIH GNKWAAIAKL  120
LPGRTDNAIK NHWNSTLRRR FDLGKSTTDA CIDRNKASSE DTVSGDDSLK TVSAYQPPVE  180
QCYQSAFRDP VSENRPQDVS VAVNECTPLS VYQAPVGENI NEYIQTPYPP PFIWVNPLVH  240
QYPHPFMTTY PPPVVTQPAE VRTEQPSLAR PVPRVGAFNI YRPPSTVPSA ALHPKPTPVQ  300
GAPDFGISKF LDGVQNEPII PSRCGSGCCA TPTGSESRTS LLGPEFVDYE ESPSFSGYEL  360
ASIATDLNNI AWIKSGLDSR STIKIETPDY RKQSQGSSGD SGQCSQHNNA RFEEGRSKLI  420
DMMTESIPRQ LVAFPAEVAG FS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-40391426109B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00337DAPTransfer from AT3G09230Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010690407.11e-170PREDICTED: uncharacterized protein LOC104903953
TrEMBLA0A0K9S3S01e-156A0A0K9S3S0_SPIOL; Uncharacterized protein
STRINGXP_010690407.11e-170(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09230.12e-77myb domain protein 1