PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca41602.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family bHLH
Protein Properties Length: 329aa    MW: 37218.8 Da    PI: 6.0073
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca41602.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.83.6e-12145198155
                 CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                 +++ hn+ Er RR ++N  f+ Lr++lP  +   p+k+ s   +  +A eYI +Lq
  Dca41602.1 145 KKEDHNAKERVRRMKLNATFQALRSMLPDsR--RPKKRWSGPYVIDRALEYIPQLQ 198
                 6889*************************55..78888*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.53E-14142221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.144144197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.7E-9145198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.9E-13145220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.60E-7145202No hitNo description
SMARTSM003533.7E-6150203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MSNPTPTPTP TPFGNLDQLL CFQEETDDDD DANDGIISNQ SSSSYYDHIM SSNLGGMSDY  60
QQELRMILVG QEKQVQEKVV VNNSNTHPLL GQLIPTTTTN DTQETTDVIK WIEQTEQHEA  120
SINNHVVLTK RIMTKEVGEG SSSVKKEDHN AKERVRRMKL NATFQALRSM LPDSRRPKKR  180
WSGPYVIDRA LEYIPQLQSQ VHKLTLEKHN IIQQNRHLSS LVATTTDDVD HQPVLNNQVH  240
NSSSTLTVSI NEVKQGELII QLCLHDDKPA VLTTLFDQFE GQGMRIVGAS SLSASENRTC  300
FHVHIQMCEK PRESDYVAIL HQKIIAWLL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021770034.11e-74transcription factor bHLH160-like isoform X2
RefseqXP_021770035.11e-74transcription factor bHLH160-like isoform X2
RefseqXP_021770036.11e-74transcription factor bHLH160-like isoform X2
TrEMBLA0A0K9RLF12e-66A0A0K9RLF1_SPIOL; Uncharacterized protein
STRINGXP_010679419.18e-68(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71200.18e-26bHLH family protein