PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca41464.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family C3H
Protein Properties Length: 617aa    MW: 70102.1 Da    PI: 7.5749
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca41464.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH37.15.3e-12480505126
                 --S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                 y   +C+++ +tG+C yGd+CkF+H+
  Dca41464.1 480 YQPDICKDYKETGYCGYGDSCKFMHD 505
                 66789********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF530983.79E-8154276IPR012337Ribonuclease H-like domain
Gene3DG3DSA:3.30.420.105.1E-5155232IPR012337Ribonuclease H-like domain
PfamPF134565.0E-13159276No hitNo description
CDDcd062229.85E-16159275No hitNo description
SuperFamilySSF902293.92E-9477510IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-7479506IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.878479507IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.8E-12480510IPR000571Zinc finger, CCCH-type
PfamPF006429.7E-10480505IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.103.2E-12544602IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF578505.98E-12554597No hitNo description
PfamPF139202.0E-8554596No hitNo description
PROSITE profilePS5008910.247555593IPR001841Zinc finger, RING-type
CDDcd001621.52E-6555596No hitNo description
SMARTSM001843.0E-4555592IPR001841Zinc finger, RING-type
PROSITE patternPS005180570579IPR017907Zinc finger, RING-type, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 617 aa     Download sequence    Send to blast
MDGNSNCRLC GDENQVETYA HLFRDCETVR RIWFGSELGL RNREGDCIGV EEWICNWLLY  60
LGKRKEVDKE TRREHQIKFL GVLWSIWISR NAVVFRFDQI NPMGMIYRIN AIVKETLQGE  120
TQNRIPDHTM EDEDMQDEQV LEVRMMGNQV CPHHMELLVD AAWKADRKAA AGWILVKGAI  180
RQGQGTTAFY AQSAAQAEAI GIKEALLWAL GKQLLHVVIR SDCLQVIQAL AGSRRACHYT  240
SSIIKELFSL SCLFHCIVFC YVPRSRVMLA HNLAKKLGSI KEVLSNMAEN TEGNGSGLNE  300
TSKSEQVCSF FRKPTKNKNI RKRAIDENDD GEDGNTETSV LHNSKRPSKA DNKLYFSTGT  360
TKKPASESAE EPRNAIFHYE SSKMIQVQND SKATATLETE TDFSRDARAI RERALKQAQE  420
ALKGKNKASG DDKLYKGMNN YTDHRAGFRR EQTVAAEKAG GAHGPLRASA HIKVSTRFDY  480
QPDICKDYKE TGYCGYGDSC KFMHDRGDYK SGWQLEKEWD EREKERKRNL AMGVRDDDDE  540
EDGEDEDDGS LPFACFICRQ PFVDAVVTNC KHYFCEHCAL KHHSKNKKCF VCDQPTGGIF  600
NTATEIRKRT AAEKKSK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5z56_M9e-652986065313RING finger protein 113A
5z58_M9e-652986065313RING finger protein 113A
6ff4_t9e-652986065313RING finger protein 113A
6ff7_t9e-652986065313RING finger protein 113A
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023908953.11e-168zinc finger CCCH domain-containing protein 1-like
SwissprotQ8GX841e-158C3H1_ARATH; Zinc finger CCCH domain-containing protein 1
TrEMBLA0A0K9RKI31e-166A0A0K9RKI3_SPIOL; Uncharacterized protein
STRINGXP_010667731.11e-166(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.11e-146C3H family protein