PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca41461.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family C3H
Protein Properties Length: 331aa    MW: 37422.3 Da    PI: 7.4559
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca41461.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.22.5e-12194219126
                 --S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                 y   +C+++ +tG+C yGd+CkF+H+
  Dca41461.1 194 YQPDICKDYKETGYCGYGDSCKFMHD 219
                 67789********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.7E-9191224IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.878193221IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-7193220IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-12194224IPR000571Zinc finger, CCCH-type
PfamPF006424.5E-10194219IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.101.1E-12258317IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF578501.85E-12268311No hitNo description
PfamPF139208.4E-9268310No hitNo description
CDDcd001622.68E-7269310No hitNo description
SMARTSM001843.0E-4269306IPR001841Zinc finger, RING-type
PROSITE profilePS5008910.247269307IPR001841Zinc finger, RING-type
PROSITE patternPS005180284293IPR017907Zinc finger, RING-type, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MAENTEGNGS GLNETSKSEQ VCSFFRKPTK NKNIRKRAID ENDDGEDGNT ETSVLHNSKR  60
PSKADNKLYF STGTTKKPAS ESAEEPRNAI FHYESSKMIQ VQNDSKATAT LETETDFSRD  120
ARAIRERALK QAQEALKGKN KASGDDKLYK GMNNYTDHRA GFRREQTVAA EKAGGAHGPL  180
RASAHIKVST RFDYQPDICK DYKETGYCGY GDSCKFMHDR GDYKSGWQLE KEWDEREKER  240
KRNLAMGVRD DDDEEDGEDE DDGSLPFACF ICRQPFVDAV VTNCKHYFCE HCALKHHSKN  300
KKCFVCDQPT GGIFNTATEI RKRTAAEKKS K
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5z56_M1e-68123205313RING finger protein 113A
5z58_M1e-68123205313RING finger protein 113A
6ff4_t1e-68123205313RING finger protein 113A
6ff7_t1e-68123205313RING finger protein 113A
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021855427.11e-173zinc finger CCCH domain-containing protein 1
RefseqXP_021855428.11e-173zinc finger CCCH domain-containing protein 1
RefseqXP_023908953.11e-173zinc finger CCCH domain-containing protein 1-like
SwissprotQ8GX841e-162C3H1_ARATH; Zinc finger CCCH domain-containing protein 1
TrEMBLA0A0K9RKI31e-171A0A0K9RKI3_SPIOL; Uncharacterized protein
STRINGXP_010667731.11e-172(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.11e-151C3H family protein