PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca41322.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family HB-PHD
Protein Properties Length: 722aa    MW: 82439.3 Da    PI: 8.525
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca41322.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox32.91.1e-10507554653
                 S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
    Homeobox   6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 
                 ++ ++ l+ L ++F++n  ps+e ++e+++ +gL+ ++V  WF+N R+
  Dca41322.1 507 RIPDDILQKLRQAFAENELPSREVKKEISDLVGLEYKKVNKWFKNARY 554
                 45667799**************************************97 PP
2PHD32.42.1e-11240295151
                 SBTTTSS..TCTTSSEEEBS.SSSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS
         PHD   1 rCkvCgk..sdeegelvlCd.gCkewfHlkClglkleseekpeg..ewlCeeCkek 51 
                 +Ck C+     e+++++lCd +C+ +fH+kC++++  ++++p +   wlC+ C++k
  Dca41322.1 240 FCKRCQTqeVSEDNDIILCDgTCNCAFHQKCIDPPMATKDIPPDdeGWLCKYCDCK 295
                 6999*9977678********56*******************99999*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579033.77E-12229297IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.104.6E-11236295IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001610.496238295IPR019787Zinc finger, PHD-finger
CDDcd155042.71E-26240292No hitNo description
PfamPF006282.7E-8240295IPR019787Zinc finger, PHD-finger
SMARTSM002498.9E-8240293IPR001965Zinc finger, PHD-type
PROSITE patternPS013590241292IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:1.10.10.603.2E-12499553IPR009057Homeodomain-like
PROSITE profilePS5007112.73499559IPR001356Homeobox domain
SMARTSM003893.8E-11500563IPR001356Homeobox domain
SuperFamilySSF466891.84E-10502565IPR009057Homeodomain-like
CDDcd000861.59E-9502563No hitNo description
PfamPF000463.0E-8507554IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 722 aa     Download sequence    Send to blast
MQMRHDLLKN VEKNRKLGIC SRGIRKRDPT LSRLISLKKR NKINVKSKKL VDSSKQGTAN  60
FCSEDDSLFS LFKQLKKTND LSKKKSNLSK KLNGSSHFSN KVDIDSDCSK KLCELSSRTK  120
EKVNGRSQAE NLKKKLKIKK GNEEVVRDEA SQLLRRARYL LVKLKLEQNL IDAYSGEGWK  180
GQSREKIKPE KELERAKKQL INCKLGIRDT VRQLDLLGAI GKIDDSFISS DGSVHHEHIF  240
CKRCQTQEVS EDNDIILCDG TCNCAFHQKC IDPPMATKDI PPDDEGWLCK YCDCKMDLLE  300
AVNAHLGTQF SDDCMWQDIF KEEALLSDAG LIDVNHEEQW PGDESDDNDY NPERDEIYST  360
SRCNATDDSG SNVESSTSNS SCSLDSEVYW ESGLSTESNE ISSDIPHMQR NCVTNCNDND  420
IVSGPRKRSA VDYKKLYDEM FAKVVSNSDV VSEDEDWDPR KRRRRKKECD AASTLMTLCG  480
SQVKPSDLQE VGKDRPVCET ARKRTSRIPD DILQKLRQAF AENELPSREV KKEISDLVGL  540
EYKKVNKWFK NARYLALKNR KKERRVPVDS DTDADADKTV EPVASKRSPS ISVCKKQSKK  600
VKWSDKLTTL ICSAKKKRLK TTYVSDDKAS LELSDDMSLK DHLLYLKTKS RRETGARHNT  660
EHPRGVSPET QMEQLCQMEA KIWKLKQVVS TFQRAISDNV DDQHTKENRV VYVPFAEVKE  720
KL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1459463RKRRR
2459466RKRRRRKK
3459467RKRRRRKKE
4460465KRRRRK
5460466KRRRRKK
6462467RRRKKE
Functional Description ? help Back to Top
Source Description
UniProtSpecifically binds to the fungal elicitor-responsive DNA element, 5'-CTAATTGTTTA-3', of the gene PR2 promoter.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By pathogen infection.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021730458.10.0pathogenesis-related homeodomain protein-like
SwissprotP487851e-131PRH_ARATH; Pathogenesis-related homeodomain protein
TrEMBLA0A0K9S1620.0A0A0K9S162_SPIOL; Uncharacterized protein
STRINGXP_010671751.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29940.11e-121pathogenesis related homeodomain protein A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]