PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca41227.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

C3H

Protein Properties

Length: 697aa MW: 77517.5 Da PI: 6.0475

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca41227.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18	5.2e-06	124	136	14	26
--TTTTT-SS-SS CS zf-CCCH 14 tCkyGdrCkFaHg 26 C++Gd+C+F+H+ Dca41227.1 124 SCRFGDKCRFSHD 136 8***********7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	11.882	112	138	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	9.0E-4	120	141	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	9.019	151	176	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:3.20.20.70	3.8E-73	341	585	IPR013785	Aldolase-type TIM barrel
SuperFamily	SSF51395	9.16E-64	345	657	No hit	No description
CDD	cd02801	1.01E-91	345	579	No hit	No description
Pfam	PF01207	4.0E-49	348	615	IPR001269	tRNA-dihydrouridine synthase
PROSITE pattern	PS01136	0	429	447	IPR018517	tRNA-dihydrouridine synthase, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008033	Biological Process	tRNA processing
GO:0055114	Biological Process	oxidation-reduction process
GO:0017150	Molecular Function	tRNA dihydrouridine synthase activity
GO:0046872	Molecular Function	metal ion binding
GO:0050660	Molecular Function	flavin adenine dinucleotide binding

Sequence ? help Back to Top
Protein Sequence Length: 697 aa Download sequence Send to blast
MAESIPENSS AQPPPSTVNS VSMDESVTES SIQNSSAQPP STSAMFEKIC KMSAEELVAK 60 AIAPVKKEFL RPPPSSRLTS ENDDGEKKSV VAEKKSKRSL RRERHNERLA GLCSEVAKTE 120 DVNSCRFGDK CRFSHDLEAY RLQKPADLEG ECPFITPTKR CPYGASCRFS GTHKPVDGDT 180 FNDLREDFEV NSLRKDVQKL LWKNKMKFPK SNTALKQLGV TGKGFTKVTD TEENGVDQSV 240 SNGSHCAEDN GCEKDNAGNK QNESSVLEKE SDDGISVNDG GRPLKKAKAA DDEKPCSDDV 300 KNGDAVMRNA SDDEREITTE NILPETDASL KLHPRERKLI DFRGKLYLAP LTTVGNLPFR 360 RVCKGLGADV TCGEMAMCTN LLQGQASEWA LLRRHKSEDL FGVQICGAYP DVVGRAAELI 420 DLECSVDFID INMGCPIDLV VNKGAGSALI TKPLRMKNVI QAACASSEKP ITVKVRTGYI 480 EGRNRIDSMI ADIYDWGASA ITIHGRSRQQ RYSKLADWGY VYDCVRKAPS SFPVLGNGDV 540 FSYQDWNTHL SDCPELSSCM VARGALIKPW LFTEIKEQRN WDISSSERLD ILRDYVRFGL 600 EHWGSDTKGV ETTRHFLLEW MSYMFRYVPV GLLEVVPQKP NWRPPSYFGR NDLETMMASE 660 SAADWIRISE MLLGKVPDGF TFAPKHKSNA YDSAENG

Sequence ? help Back to Top

Protein Sequence Length: 697 aa Download sequence Send to blast

MAESIPENSS AQPPPSTVNS VSMDESVTES SIQNSSAQPP STSAMFEKIC KMSAEELVAK  60
AIAPVKKEFL RPPPSSRLTS ENDDGEKKSV VAEKKSKRSL RRERHNERLA GLCSEVAKTE  120
DVNSCRFGDK CRFSHDLEAY RLQKPADLEG ECPFITPTKR CPYGASCRFS GTHKPVDGDT  180
FNDLREDFEV NSLRKDVQKL LWKNKMKFPK SNTALKQLGV TGKGFTKVTD TEENGVDQSV  240
SNGSHCAEDN GCEKDNAGNK QNESSVLEKE SDDGISVNDG GRPLKKAKAA DDEKPCSDDV  300
KNGDAVMRNA SDDEREITTE NILPETDASL KLHPRERKLI DFRGKLYLAP LTTVGNLPFR  360
RVCKGLGADV TCGEMAMCTN LLQGQASEWA LLRRHKSEDL FGVQICGAYP DVVGRAAELI  420
DLECSVDFID INMGCPIDLV VNKGAGSALI TKPLRMKNVI QAACASSEKP ITVKVRTGYI  480
EGRNRIDSMI ADIYDWGASA ITIHGRSRQQ RYSKLADWGY VYDCVRKAPS SFPVLGNGDV  540
FSYQDWNTHL SDCPELSSCM VARGALIKPW LFTEIKEQRN WDISSSERLD ILRDYVRFGL  600
EHWGSDTKGV ETTRHFLLEW MSYMFRYVPV GLLEVVPQKP NWRPPSYFGR NDLETMMASE  660
SAADWIRISE MLLGKVPDGF TFAPKHKSNA YDSAENG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6ei9_A	2e-27	342	577	27	258	tRNA-dihydrouridine synthase B
6ei9_B	2e-27	342	577	27	258	tRNA-dihydrouridine synthase B
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021738748.1	0.0	tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like
Refseq	XP_021738749.1	0.0	tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like
Refseq	XP_021738750.1	0.0	tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like
Swissprot	Q9T0J6	0.0	DUS3L_ARATH; tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like
TrEMBL	A0A0K9RD76	0.0	A0A0K9RD76_SPIOL; tRNA-dihydrouridine(47) synthase [NAD(P)(+)]
STRING	XP_010665864.1	0.0	(Beta vulgaris)

Publications ? help Back to Top
Szponarski W,Sommerer N,Boyer JC,Rossignol M,Gibrat R Large-scale characterization of integral proteins from Arabidopsis vacuolar membrane by two-dimensional liquid chromatography. Proteomics, 2004. 4(2): p. 397-406 [PMID:14760709]