PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca40421.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

Nin-like

Protein Properties

Length: 839aa MW: 92278.9 Da PI: 6.0165

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca40421.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	80.8	1.4e-25	582	666	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLg.................................vclTvLKriCRqyGIkRWPhRkiksl 52 aek++sl++l++yFs+++kdAAk++g vc+T+LKriCRq+GI+RWP+Rki+++ Dca40421.1 582 AEKTVSLSVLQQYFSGSLKDAAKNIGdstrmsfssvrevvrnsdgspsilialycrnfaVCPTTLKRICRQHGISRWPSRKINKV 666 5899*******************************************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	12.73	567	686	IPR003035	RWP-RK domain
Pfam	PF02042	1.0E-22	585	666	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 839 aa Download sequence Send to blast
MEYSFSTKGK EVNNYWLSST QSEVSLDDVD REARNSTDDA GFGDIPEMMS FEGSAGWCSS 60 PSTTEQLLAS YGIASLLTNP PSNYTSFDQM NFSEQQRAAF PKSYDNVVNG FNVLGSPLSY 120 VDKMVFTSSD VYSGETHLGS RKDNVLLVPQ GRVPRPISPS LSDKMLRALS LFKESSGGGI 180 LAQMWVPITT GDHTVLSTYE QPYLLDQMLL GYREVSRSYT FSAEEKPGCF PGLPGRVFIS 240 KIPEWTSNIS YYSSAEYLRV QHAHDHEVRG SVALPIFSPD DGSCCAVLEL VTVREKPNFD 300 SEIESVCRAF EAVDLRTTAP PRLPSQCISM NRRSVLGEIT DVLRVVCHAH RLPLALTWIP 360 CTLEEKDGEN IICIHSGDNS LNLNKKSILC IEDTTCYVND KEMQGFVHAC SEHPLEEGQG 420 VAGKALQSNI PFFHSDVKNY HINEYPLVQH ARKYGLGAAV AIRLRSTYTG NDDYILEFFL 480 PLNMKGNKEQ QLLLDSLSGT MQKICKSLRK VSEAELVGPV ETKVVERFCA PQSFFPSDTS 540 INSSQHMSLG ISTAKVDSIE GSCSSEQGSG SRRPPEKKRS TAEKTVSLSV LQQYFSGSLK 600 DAAKNIGDST RMSFSSVREV VRNSDGSPSI LIALYCRNFA VCPTTLKRIC RQHGISRWPS 660 RKINKVNRSL KKIQTVLDSV EGVEGGLKFD PTTGELVAAG SVIQEFDSSK SIFMPAKNLT 720 GKTSELAAKD DASSPPPTLL KGTFPSIKME FTGNQTNVPC APFEVESCEL GNVFRHFGSQ 780 PTRGLVDLED MDVGMEHEDG IVEHHHQTTS SNMTESSNAS GSSISANCDD KRPNSKRKA

Sequence ? help Back to Top

Protein Sequence Length: 839 aa Download sequence Send to blast

MEYSFSTKGK EVNNYWLSST QSEVSLDDVD REARNSTDDA GFGDIPEMMS FEGSAGWCSS  60
PSTTEQLLAS YGIASLLTNP PSNYTSFDQM NFSEQQRAAF PKSYDNVVNG FNVLGSPLSY  120
VDKMVFTSSD VYSGETHLGS RKDNVLLVPQ GRVPRPISPS LSDKMLRALS LFKESSGGGI  180
LAQMWVPITT GDHTVLSTYE QPYLLDQMLL GYREVSRSYT FSAEEKPGCF PGLPGRVFIS  240
KIPEWTSNIS YYSSAEYLRV QHAHDHEVRG SVALPIFSPD DGSCCAVLEL VTVREKPNFD  300
SEIESVCRAF EAVDLRTTAP PRLPSQCISM NRRSVLGEIT DVLRVVCHAH RLPLALTWIP  360
CTLEEKDGEN IICIHSGDNS LNLNKKSILC IEDTTCYVND KEMQGFVHAC SEHPLEEGQG  420
VAGKALQSNI PFFHSDVKNY HINEYPLVQH ARKYGLGAAV AIRLRSTYTG NDDYILEFFL  480
PLNMKGNKEQ QLLLDSLSGT MQKICKSLRK VSEAELVGPV ETKVVERFCA PQSFFPSDTS  540
INSSQHMSLG ISTAKVDSIE GSCSSEQGSG SRRPPEKKRS TAEKTVSLSV LQQYFSGSLK  600
DAAKNIGDST RMSFSSVREV VRNSDGSPSI LIALYCRNFA VCPTTLKRIC RQHGISRWPS  660
RKINKVNRSL KKIQTVLDSV EGVEGGLKFD PTTGELVAAG SVIQEFDSSK SIFMPAKNLT  720
GKTSELAAKD DASSPPPTLL KGTFPSIKME FTGNQTNVPC APFEVESCEL GNVFRHFGSQ  780
PTRGLVDLED MDVGMEHEDG IVEHHHQTTS SNMTESSNAS GSSISANCDD KRPNSKRKA

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021739772.1	0.0	protein NLP9-like
Swissprot	O22864	0.0	NLP8_ARATH; Protein NLP8
TrEMBL	A0A0K9QLA0	0.0	A0A0K9QLA0_SPIOL; Uncharacterized protein
STRING	XP_010682023.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43500.2	0.0	Nin-like family protein

Publications ? help Back to Top
Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416]