PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca40213.1
Common NameDcZFP1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family C3H
Protein Properties Length: 630aa    MW: 68742.1 Da    PI: 7.0615
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca40213.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.45.1e-08241261526
                 --SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                 +C+ f + G Ck G+ C FaHg
  Dca40213.1 241 PCPEFKK-GSCKKGEECEFAHG 261
                 8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484031.86E-1219141IPR020683Ankyrin repeat-containing domain
CDDcd002047.90E-1055133No hitNo description
PROSITE profilePS5029711.74560130IPR020683Ankyrin repeat-containing domain
SMARTSM002480.0486090IPR002110Ankyrin repeat
Gene3DG3DSA:1.25.40.207.0E-1261142IPR020683Ankyrin repeat-containing domain
PfamPF136374.7E-562108No hitNo description
SMARTSM002485395127IPR002110Ankyrin repeat
PROSITE profilePS500888.57695130IPR002110Ankyrin repeat
Gene3DG3DSA:4.10.1000.105.5E-5234262IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.216236263IPR000571Zinc finger, CCCH-type
SMARTSM003565.3E-5236262IPR000571Zinc finger, CCCH-type
PfamPF006423.6E-5241261IPR000571Zinc finger, CCCH-type
SMARTSM0035635271294IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.709271295IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 630 aa     Download sequence    Send to blast
MGVEMIEDNP TTLPSSLLLE LAAFDDVDAF KLAVEKPGFG LDDAGFWYTR NFGSNKMSCE  60
LRTPLMIAAQ YGSIRVLDFI IGSGEVDVNR VAGSDRVTAL HCAVLGGSDS CSSVVLRLVS  120
AEANVNLLDA SGNRACDLIA KLPKIPTKSK QLDTLLKGED CDSISMSDSE SDSSSKKEYS  180
VSDLPDINNG VYGSDEFRMY CFKIKPCSRA YTHDWTECPF AHPGENARRR DPTKVNYTCV  240
PCPEFKKGSC KKGEECEFAH GVFESWLHPA QYRTRLCKDE TGCARKVCFF AHRREELRPV  300
YASTGSAVPD NGMSVSSPRG SGGFGCTSTP PLSPSFAPSS PKNGASGGGG VMWQGKSSGF  360
GGGTPPPSLQ LPGSRLRSSL SARDMEFERE LLKVEHQMKQ QHFHNQQQLH QQQQQQQMMS  420
PRWNSNGRIS DMSPSNLETA FNSVNITRSM SMSTPMSMSM SMSPQSVLDS PMNIPRKMSP  480
PSVLDSPKAV AMLNSRAAAF VKRSQSFIDR SATMNGNNSS PMSPNLSDWS APNGKLDWGM  540
QGDEFNKLRK SNSFGYKVNH NNTTRASPPG YGEPDVTWVN SLVKDETDSG YAGLRSPNYG  600
RGGGGQGNGG RVQDVCPPWE QLYMEHEVVV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010689596.10.0PREDICTED: zinc finger CCCH domain-containing protein 29
TrEMBLD4QD670.0D4QD67_DIACA; CCCH-type zinc finger protein
STRINGXP_010689596.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40140.21e-138C3H family protein
Publications ? help Back to Top
  1. Harada T,Torii Y,Morita S,Masumura T,Satoh S
    Differential expression of genes identified by suppression subtractive hybridization in petals of opening carnation flowers.
    J. Exp. Bot., 2010. 61(9): p. 2345-54
    [PMID:20308205]