PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca39896.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family ERF
Protein Properties Length: 313aa    MW: 35416.6 Da    PI: 4.7623
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca39896.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.42.1e-1994143255
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                 +y+GVr+++ +g+++AeIrdps    r +r++lg+f+taeeAa  +++a+ +l+g
  Dca39896.1  94 KYRGVRRRP-WGKYAAEIRDPS----RrTRIWLGTFDTAEEAAMVYDNAAVQLRG 143
                 8********.**********84....34************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541719.15E-2294151IPR016177DNA-binding domain
SMARTSM003801.7E-3594157IPR001471AP2/ERF domain
PROSITE profilePS5103222.93294151IPR001471AP2/ERF domain
PfamPF008474.2E-1294143IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.8E-3094151IPR001471AP2/ERF domain
CDDcd000186.70E-3094151No hitNo description
PRINTSPR003678.0E-1195106IPR001471AP2/ERF domain
PRINTSPR003678.0E-11117133IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MDPTGVSSPV KYTKQRSVTI KVSRTTSRSP GPRVVRVSYI DDDATDSDND DSNNNYNRRR  60
KVVRHVTEIK FSTGQAREST QARTQAQSQE GEVKYRGVRR RPWGKYAAEI RDPSRRTRIW  120
LGTFDTAEEA AMVYDNAAVQ LRGPHALTNF RRPDVSPGPP PPPTQPQQQE MKMEEQQQRA  180
QSPISVLTFQ TQDETVSQLK RSQSQSQSQS EGEGEGGYRE VGEMELDQWT LNDFFGYDNT  240
PFPIFTHDDF GDDLLHFDHL PDLTRTLDLH FDAHDCFLGP SSSSSSSSSA LLFEADDYLV  300
NHDDDDDTAM VLC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-2095150359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A2e-2095150662ATERF1
3gcc_A2e-2095150662ATERF1
5wx9_A2e-20941501471Ethylene-responsive transcription factor ERF096
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61630.15e-31cytokinin response factor 6