PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Dca39736.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
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Family | ERF | ||||||||
Protein Properties | Length: 204aa MW: 22107.2 Da PI: 7.7745 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.5 | 4e-19 | 22 | 71 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +++GVr ++ +gr++AeIrdp++ ++r++lg+f+ta +Aa+a++ a+++l+g Dca39736.1 22 KFRGVRKRP-WGRFAAEIRDPVK---KTRVWLGTFDTAVDAARAYDIAALNLRG 71 89*******.**********654...5*************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 9.8E-12 | 22 | 71 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.576 | 22 | 79 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.69E-21 | 22 | 79 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 2.49E-31 | 22 | 78 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 1.7E-30 | 22 | 78 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.1E-37 | 22 | 85 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.2E-10 | 23 | 34 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.2E-10 | 45 | 61 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 204 aa Download sequence Send to blast |
MRKVRSTVAP PPSSDPPSAD VKFRGVRKRP WGRFAAEIRD PVKKTRVWLG TFDTAVDAAR 60 AYDIAALNLR GPKAKTNFLT PLLPSAAGDH RRRTPEMEAA EVEIMIQRPA TSGMSSTVES 120 YSGPKPVHVR SSCEKTKLPP LDCRSDCDSS SSVIDCEDVA DIASSSAVAE VAVNFTKCPL 180 PFDLNLPPVD FSGLDDYPST TLCL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 7e-20 | 23 | 78 | 6 | 62 | ATERF1 |
3gcc_A | 7e-20 | 23 | 78 | 6 | 62 | ATERF1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00194 | DAP | Transfer from AT1G50640 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021849043.1 | 5e-50 | ethylene-responsive transcription factor 3 | ||||
TrEMBL | A0A0V0HV08 | 1e-53 | A0A0V0HV08_SOLCH; Putative ethylene-responsive transcription factor 3-like | ||||
STRING | XP_010675777.1 | 5e-45 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50640.1 | 8e-27 | ethylene responsive element binding factor 3 |