PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca39639.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family MYB
Protein Properties Length: 524aa    MW: 57454.8 Da    PI: 4.5823
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca39639.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.91e-174087148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT  Ed +lv++v+++G g+W+++ ++ g+ R++k+c++rw ++l
       Dca39639.1 40 KGPWTSAEDAILVQYVTMHGEGNWNAVQKHSGLSRCGKSCRLRWANHL 87
                     79******************************************9986 PP
2Myb_DNA-binding49.41e-1593136146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +g++T+eE+ l++++++++G++ W++ a++++ gRt++++k++w++
       Dca39639.1  93 KGAFTQEEEALIIELHAKMGNK-WARMAAELP-GRTDNEIKNFWNT 136
                      799*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.9153887IPR017930Myb domain
SuperFamilySSF466893.29E-2939134IPR009057Homeodomain-like
SMARTSM007171.7E-143989IPR001005SANT/Myb domain
PfamPF002494.7E-154087IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.7E-244194IPR009057Homeodomain-like
CDDcd001671.42E-104287No hitNo description
PROSITE profilePS5129425.2388142IPR017930Myb domain
SMARTSM007174.7E-1692140IPR001005SANT/Myb domain
PfamPF002499.0E-1593136IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-2595140IPR009057Homeodomain-like
CDDcd001671.01E-1195136No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009789Biological Processpositive regulation of abscisic acid-activated signaling pathway
GO:0043068Biological Processpositive regulation of programmed cell death
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0045926Biological Processnegative regulation of growth
GO:0048235Biological Processpollen sperm cell differentiation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 524 aa     Download sequence    Send to blast
MIEMLSDSEN RKASRCRKTS PTAEEVPSGG NSSGELLLKK GPWTSAEDAI LVQYVTMHGE  60
GNWNAVQKHS GLSRCGKSCR LRWANHLRPD LKKGAFTQEE EALIIELHAK MGNKWARMAA  120
ELPGRTDNEI KNFWNTRIKK LQRAGLPIYP PDIHVYPMNE GEQSDDMVTG DIHHSDASQT  180
DAFDLPDIEF KNLELNQGLL NCAPGMLDIG PSQNFGYMFP GINPHKRLRE MGTAFHGSGP  240
LLDLCDNSPF GKLSAAQPLW ASSSSYDPDF QSLGSHAPIN GKSSSSEPVS EAMKLELPSL  300
QHSASQVGGA QLPPLETVET LIQSPLREHT QSNCTSPRNS GLLEAIVYES QLIKNSNPQM  360
MSEPSFEAAG DDIEPSSRNA SEKRWDSCSG DPISPLSQSA ASVFVDYTPG SGASSSDEPP  420
FAETSLGCMM KLEPLEWGSI ESEEQNDNSC SLEYLRPDAL LDSFWLGHRI ARSNEQLITE  480
DIGPFLNEEL SCEYKQQTSA LPSESNQSLS PKSSTFDNKS SKDD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-29381405106B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00490DAPTransfer from AT5G06100Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010673830.10.0PREDICTED: transcription factor GAMYB-like
RefseqXP_010673832.10.0PREDICTED: transcription factor GAMYB-like
TrEMBLA0A0K9R2L50.0A0A0K9R2L5_SPIOL; Uncharacterized protein
STRINGXP_010673830.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06100.13e-80myb domain protein 33