PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Dca3939.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
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Family | TALE | ||||||||
Protein Properties | Length: 137aa MW: 15455.4 Da PI: 9.6122 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 17.4 | 7.8e-06 | 106 | 134 | 19 | 45 |
HHH..SSS--HHHHHHHHHHCTS-HHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVk 45 Fe ++yps ++++ LA+k+gL+ +qV+ Dca3939.1 106 FEHflHPYPSDTDKQMLAQKTGLSRSQVS 134 665559*********************96 PP | |||||||
2 | BELL | 31 | 6.2e-11 | 6 | 36 | 42 | 72 |
BELL 42 glgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 g+g+a+p++s+A +a+ rhF cLk+ai +qi Dca3939.1 6 GYGNAAPFISFAVRAMFRHFHCLKNAILDQI 36 99***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF07526 | 6.0E-6 | 6 | 32 | IPR006563 | POX domain |
SuperFamily | SSF46689 | 1.58E-9 | 75 | 134 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.21E-7 | 87 | 133 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 9.8E-17 | 87 | 134 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 3.0E-11 | 104 | 135 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 137 aa Download sequence Send to blast |
MQSKEGYGNA APFISFAVRA MFRHFHCLKN AILDQIRVSS KGFGSGEDSR RERDLGSCPD 60 DKSPYDPKQN MGQDHGSGAN FLQHPVWRSQ RGFPDKAVAV LRTWLFEHFL HPYPSDTDKQ 120 MLAQKTGLSR SQVSLSL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021769074.1 | 3e-58 | BEL1-like homeodomain protein 9 | ||||
Refseq | XP_021845628.1 | 3e-58 | BEL1-like homeodomain protein 9 | ||||
TrEMBL | A0A0K9RBJ4 | 6e-57 | A0A0K9RBJ4_SPIOL; Uncharacterized protein | ||||
STRING | XP_010687910.1 | 2e-56 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G02030.1 | 9e-33 | TALE family protein |