PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca39276.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family GRAS
Protein Properties Length: 534aa    MW: 59497.4 Da    PI: 5.5841
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca39276.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS442.72.6e-1351625321374
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                 l+++L +cA+av+++d+  +q+l+ +l++l+s +g+p+qRl ay++e+L ar a+s+s++ykal+++e +   s++ l+++++++ev+P++kf+++ aN
  Dca39276.1 162 LKQVLAACAKAVAENDQLVVQWLMDELRQLVSVSGEPIQRLGAYMLEGLVARQASSGSSIYKALRCKEPA---SADLLSYMHILFEVCPYIKFGYMSAN 257
                 5799*****************************************************************9...9************************* PP

        GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
                  aI ea++ e+rvHiiDf+i+qG QW++Llqa+a+Rp+gpp++RiTg+++++s   +   l+ +g+rLa++A+++++pfef+  + k+   ++l+++ v
  Dca39276.1 258 GAIAEATKDERRVHIIDFQIGQGSQWVTLLQAFAARPGGPPHIRITGIDDSHSAyaRGGGLNIVGQRLARLAQSFKIPFEFHG-IDKSGCRVQLSDFGV 355
                 **************************************************888799999************************.6999*********** PP

        GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreiv 295
                 k+g+alaVn++++lh+++desvs+e++rd++L+lv++l+Pkvv++veqe+++n+ sFl rf e+l+yy+a+f+s++++lpr++++ri+vE+++l+r++v
  Dca39276.1 356 KHGDALAVNFAFMLHHMPDESVSTENHRDRLLHLVRGLNPKVVTLVEQECNTNTVSFLPRFQETLDYYTAMFESMDVTLPRDHKDRINVEQHCLARDVV 454
                 *************************************************************************************************** PP

        GRAS 296 nvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 n++aceg er+erhe l kWr+r+++aGF+p++ls+ +++++k+ll+ + ++ yr+ee++g+l+lgW++r Lv+ +aW+
  Dca39276.1 455 NLIACEGVERVERHELLVKWRSRFTMAGFQPYSLSTLVNSTIKTLLKSYCDR-YRLEERDGALYLGWMNRDLVASCAWQ 532
                 **************************************************66.*************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098566.969136513IPR005202Transcription factor GRAS
PfamPF035149.1E-133162532IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009640Biological Processphotomorphogenesis
GO:0005737Cellular Componentcytoplasm
GO:0004871Molecular Functionsignal transducer activity
Sequence ? help Back to Top
Protein Sequence    Length: 534 aa     Download sequence    Send to blast
MSNGLHCQPN REIDMYFGPN FQSLNSKPCY SDISNESCAP SKMSSGGQYN TLESSTGVGN  60
YPVYSSTPTF SYLSNGSPGS MVDTSSYSFD QNCSTDNPDN SPLSNSCTTE DFGDLKYKLM  120
ELESAMLGPD MDITAFEGGI HLPSLEIDSW GKVMEMITRA DLKQVLAACA KAVAENDQLV  180
VQWLMDELRQ LVSVSGEPIQ RLGAYMLEGL VARQASSGSS IYKALRCKEP ASADLLSYMH  240
ILFEVCPYIK FGYMSANGAI AEATKDERRV HIIDFQIGQG SQWVTLLQAF AARPGGPPHI  300
RITGIDDSHS AYARGGGLNI VGQRLARLAQ SFKIPFEFHG IDKSGCRVQL SDFGVKHGDA  360
LAVNFAFMLH HMPDESVSTE NHRDRLLHLV RGLNPKVVTL VEQECNTNTV SFLPRFQETL  420
DYYTAMFESM DVTLPRDHKD RINVEQHCLA RDVVNLIACE GVERVERHEL LVKWRSRFTM  480
AGFQPYSLST LVNSTIKTLL KSYCDRYRLE ERDGALYLGW MNRDLVASCA WQCS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-571605322375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269|PubMed:10817761}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021724509.10.0scarecrow-like protein 21 isoform X1
RefseqXP_021724510.10.0scarecrow-like protein 21 isoform X1
RefseqXP_021724511.10.0scarecrow-like protein 21 isoform X1
SwissprotQ9LDL70.0PAT1_ARATH; Scarecrow-like transcription factor PAT1
TrEMBLA0A0K9QMW30.0A0A0K9QMW3_SPIOL; Uncharacterized protein
STRINGXP_010666093.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Heyman J, et al.
    The heterodimeric transcription factor complex ERF115-PAT1 grants regeneration competence.
    Nat Plants, 2016. 2(11): p. 16165
    [PMID:27797356]