PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca39010.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family MYB
Protein Properties Length: 199aa    MW: 23014.8 Da    PI: 6.367
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca39010.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.19.7e-14450244
                     SSS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGgg.....tWktIartmgkgRtlkqcksrw 44
                     ++WT eEd+l+ +av ++ ++      W++Ia +++ gR+l+++++++
       Dca39010.1  4 LKWTREEDKLFEEAVVLYSSEesedeKWRKIAGHVP-GRSLEELRDHY 50
                     69**********************************.**********9 PP
2Myb_DNA-binding44.53.6e-1499143347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ l++ +  ++G+g+W++I+r +  +Rt+ q+ s+ qky
       Dca39010.1  99 PWTEEEHRLFLVGLDKYGKGDWRSISRNVVITRTPTQVASHAQKY 143
                      8*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.345158IPR017930Myb domain
SMARTSM007176.4E-9256IPR001005SANT/Myb domain
SuperFamilySSF466891.51E-9454IPR009057Homeodomain-like
CDDcd001672.28E-9554No hitNo description
Gene3DG3DSA:1.10.10.601.4E-8553IPR009057Homeodomain-like
PfamPF002491.8E-10550IPR001005SANT/Myb domain
PROSITE profilePS5129419.43492148IPR017930Myb domain
SuperFamilySSF466893.18E-1794149IPR009057Homeodomain-like
TIGRFAMsTIGR015572.7E-1795147IPR006447Myb domain, plants
SMARTSM007171.2E-1196146IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-1198142IPR009057Homeodomain-like
CDDcd001675.54E-1099144No hitNo description
PfamPF002496.1E-1399143IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MGGLKWTREE DKLFEEAVVL YSSEESEDEK WRKIAGHVPG RSLEELRDHY DELVYDVELI  60
DSGRVDPPSY SDELVTRCGQ INFEKKPPTC DLERKRGTPW TEEEHRLFLV GLDKYGKGDW  120
RSISRNVVIT RTPTQVASHA QKYFLRQNSV KKERKRTSIH DITTVQQTCI SPPQRPTLQQ  180
VGASQQGQAM GFQNFEYPA
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00055PBMTransfer from AT5G04760Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010695074.11e-85PREDICTED: transcription factor DIVARICATA
SwissprotQ9FNN63e-58SRM1_ARATH; Transcription factor SRM1
TrEMBLA0A0J8E4757e-84A0A0J8E475_BETVU; Uncharacterized protein
STRINGXP_010695074.14e-85(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04760.12e-67MYB family protein
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]