PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Dca38601.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 198aa MW: 22390.6 Da PI: 5.4473 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 43.8 | 4.6e-14 | 102 | 189 | 4 | 99 |
E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 ++ps+++ +l lp +f++e + ++ + +tl de+g+++ + rkk+ l++GWk+F+ ++L +gD vvF+l++ s +v ++r+ Dca38601.1 102 PMLPSHTSGGFWLGLPTDFCRESM--PRDDGVVTLVDEEGEEFPTVYLARKKG----LSGGWKGFAVFHELVDGDAVVFQLIKPSVL--KVYIIRA 189 68899999************9996..334558***************667776....9***********************985555..8888876 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.41E-21 | 95 | 191 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.2E-17 | 96 | 191 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.54E-21 | 97 | 188 | No hit | No description |
PROSITE profile | PS50863 | 11.476 | 99 | 190 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.7E-17 | 99 | 190 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.3E-12 | 103 | 189 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 198 aa Download sequence Send to blast |
MFMVVVKRGS RCIRWLAAAW GVKVMVAGGA WAWVGSQRER WSFELAGQQR EREGVRWTYG 60 VARRDLSDRV YATEEERVFS INEAEKLEEK LKEEGFPTLI RPMLPSHTSG GFWLGLPTDF 120 CRESMPRDDG VVTLVDEEGE EFPTVYLARK KGLSGGWKGF AVFHELVDGD AVVFQLIKPS 180 VLKVYIIRAN GLESGEDS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010667517.1 | 1e-69 | PREDICTED: B3 domain-containing protein At5g42700 | ||||
Swissprot | Q69V36 | 6e-54 | Y6944_ORYSJ; B3 domain-containing protein Os06g0194400 | ||||
TrEMBL | A0A0J8B623 | 3e-68 | A0A0J8B623_BETVU; Uncharacterized protein | ||||
STRING | XP_010667517.1 | 5e-69 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G42700.1 | 1e-43 | B3 family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|