PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Dca38459.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
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Family | SRS | ||||||||
Protein Properties | Length: 230aa MW: 24972.4 Da PI: 8.1988 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 167.1 | 9.8e-52 | 14 | 154 | 3 | 153 |
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskkele 101 s t+sCqdCGn+ak+dC+h+RCRtCCk+rg+ C thvkstWvp+a+rr+rq++++ +++++ + ++ + + s+ + l++ +++s+ + + Dca38459.1 14 SETISCQDCGNKAKRDCEHRRCRTCCKTRGLPCPTHVKSTWVPVARRRQRQHHHHHQHHHH-----NLFNNLPLS-LSTPTPFLHCLTTTSS----SGQ 102 6789**********************************************88776643322.....223333333.2344444444443333....334 PP DUF702 102 tsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153 ++P+ev+s a f+c+rvss d+ e++aYqt+++igGhvfkGiLydqG+ Dca38459.1 103 EGNFPAEVNSLATFKCIRVSSDDNVVEQYAYQTSINIGGHVFKGILYDQGTT 154 667***********************************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 6.6E-51 | 16 | 153 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 6.3E-24 | 18 | 60 | IPR006510 | Zinc finger, lateral root primordium type 1 |
TIGRFAMs | TIGR01624 | 1.4E-23 | 106 | 152 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence Send to blast |
MTGNNDNNNN SASSETISCQ DCGNKAKRDC EHRRCRTCCK TRGLPCPTHV KSTWVPVARR 60 RQRQHHHHHQ HHHHNLFNNL PLSLSTPTPF LHCLTTTSSS GQEGNFPAEV NSLATFKCIR 120 VSSDDNVVEQ YAYQTSINIG GHVFKGILYD QGTTTTAATT SGGGGDQSSS AGTSDYPHHH 180 QFSITAATTA AAHTGDGGGG ANVLYPPHPL YSTPFNAFLP GMQFFPHPRP |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021849934.1 | 3e-73 | protein SHI RELATED SEQUENCE 1 | ||||
TrEMBL | A0A0K9RW43 | 7e-72 | A0A0K9RW43_SPIOL; Uncharacterized protein | ||||
STRING | XP_010690810.1 | 2e-66 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G51060.1 | 2e-41 | Lateral root primordium (LRP) protein-related |