PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca38307.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family ERF
Protein Properties Length: 288aa    MW: 32093.7 Da    PI: 7.9293
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca38307.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2612.7e-19104153255
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  y+GVr+++ +g+WvAeIr p++   r+r +lg+f tae Aa a+++a+ kl+g
  Dca38307.1 104 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFETAEAAALAYDNAAYKLRG 153
                 59******9.**********965...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.23E-21103163No hitNo description
PROSITE profilePS5103222.893104161IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-31104162IPR001471AP2/ERF domain
SMARTSM003804.5E-36104167IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-21104161IPR016177DNA-binding domain
PRINTSPR003671.0E-10105116IPR001471AP2/ERF domain
PfamPF008475.9E-13105153IPR001471AP2/ERF domain
PRINTSPR003671.0E-10127143IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MATTIDSYNN NNITNTNHFN LVNDELISAL QPFIDYTNNP SNNPSTYNYM FPNSGFSLNS  60
GFSSSSGFRS SSGLGSSYNA NKINQYLSPK CVSMKQVKNK ATKLYRGVRQ RHWGKWVAEI  120
RLPKNRTRLW LGTFETAEAA ALAYDNAAYK LRGDHAKLNF SELKHHGDFV LGHFGHFKPL  180
PSSVCAKLNA ICQGMEGCHT QKNSGVSSFV SNSIKEEFGS NSESPVLNTD SLMKRSHNIF  240
KTEEFYEELS PDSGSSFLNF KECGLGDENV ESLSLSRFPS VEIDWASL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A9e-22103160159ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010680571.13e-68PREDICTED: ethylene-responsive transcription factor RAP2-4
STRINGXP_010680571.11e-67(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39780.16e-46ERF family protein