PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca38047.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family CPP
Protein Properties Length: 589aa    MW: 63252.5 Da    PI: 7.8253
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca38047.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR42.11.7e-13120158342
         TCR   3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 
                  k+CnCk+s+Clk+YCeCfa+g++C+  C+C++C+N+ e+
  Dca38047.1 120 PKQCNCKHSRCLKLYCECFASGVYCDG-CNCNNCCNNVEN 158
                 589************************.********9875 PP
2TCR51.12.8e-16202241140
         TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                 k++kgC+Ckks ClkkYCeCf+a+  Cse+CkC dCkN e
  Dca38047.1 202 KHNKGCHCKKSGCLKKYCECFQANILCSENCKCIDCKNFE 241
                 589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011141.5E-12118158IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163436.136119242IPR005172CRC domain
PfamPF036383.9E-10121155IPR005172CRC domain
SMARTSM011143.5E-20202243IPR033467Tesmin/TSO1-like CXC domain
PfamPF036386.2E-13205240IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 589 aa     Download sequence    Send to blast
MEEEREKCSN SPLKSKPSST PASFPAKLLA RQLDFTAATT TTSVSTPPPT QNQPPAASPP  60
PPPLQPPVTS SVTLAPRQPT TTAISSPMAA HPTIRPLKPE SPHGRSRSNV DAKDGTPKRP  120
KQCNCKHSRC LKLYCECFAS GVYCDGCNCN NCCNNVENEA ARREAVEATL ERNPNAFRPK  180
IASSPHNTRD TREEAGEVIV GKHNKGCHCK KSGCLKKYCE CFQANILCSE NCKCIDCKNF  240
EGSEERLAIF HGDHGNNLTY MQQAANAAIA GAIGSSIVNS TSNPRKRRPP PEPLVGPPSK  300
DPPVSRGSQF QPAQANHIRT SGACVVSSGF GARGGNSVSL GASKFTYRSL LADIIQPQDV  360
KELCSVLVVL SEEAAKTIAE SRIANEKHAT NGLDTANTTS SSERLQSRDE SEIRAAPGDY  420
SGGHEFNVDS SEISQSRPMS PLTLALRCDE EDTTFTPSDS PDRLANNHND TTPELLNQSK  480
ADTEVYAEQE RIVLTKFRDC LNRLITYGEL KETKCSSLAQ GISNGSANPT ADGFTSQEPS  540
SYNGVVKHFA PATSRTPTTI ATTITAVPTN VTNNSKPTSS EKGYSKPTI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A1e-3011725110132Protein lin-54 homolog
5fd3_B1e-3011725110132Protein lin-54 homolog
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021862324.10.0protein tesmin/TSO1-like CXC 5
SwissprotQ9SZD11e-164TCX5_ARATH; Protein tesmin/TSO1-like CXC 5
TrEMBLA0A0K9QRU40.0A0A0K9QRU4_SPIOL; Uncharacterized protein
STRINGXP_010688245.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.11e-131Tesmin/TSO1-like CXC domain-containing protein