PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca37621.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

bZIP

Protein Properties

Length: 387aa MW: 42264 Da PI: 6.7921

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca37621.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	33.1	1.3e-10	240	299	4	63
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 kr +r NR++A rs +RK +i+eLe kv++L++e ++L +l l+ +a l +++ Dca37621.1 240 PKRVKRILANRVSAARSKERKTRYIAELEYKVQTLQTEATSLSTQLTFLQRDSADLMNQN 299 5999*****************************************999999998887776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	6.4E-18	237	301	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.668	239	302	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	8.3E-10	241	299	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	2.6E-11	241	297	No hit	No description
Gene3D	G3DSA:1.20.5.170	6.6E-11	241	298	No hit	No description
CDD	cd14703	3.06E-20	242	293	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 387 aa Download sequence Send to blast
MLNQAINQAQ LGINGENQSN YGKRSVLGMP PSHPHSQIRV SNATSFDRLS LPPLGGHRRC 60 DSDGQLRISP PSSAAVATEN PAKLIMKREG EIGDKDGLIS AYMMNYGGND ECSVEEKDSK 120 SSENDGDSSG ISSNSIDKVG GGGGSGSRHC RSLSIDSFME NFRGLNGEMS SMVAPPPPPP 180 PQLSMSTSSG ARSAQHSPSS SMDGSTGLFS LEFGNVQFSS EELKKIMANE KLVEFSKADP 240 KRVKRILANR VSAARSKERK TRYIAELEYK VQTLQTEATS LSTQLTFLQR DSADLMNQNN 300 ELRFRLQALD QQAQLRDALN EALRDDVQRL RIAAGMLDMC LPQQVVHNNH AFQTQMSSQN 360 MHQSQQSQEN VGCSHNQPMQ SVKEEGS

Sequence ? help Back to Top

Protein Sequence Length: 387 aa Download sequence Send to blast

MLNQAINQAQ LGINGENQSN YGKRSVLGMP PSHPHSQIRV SNATSFDRLS LPPLGGHRRC  60
DSDGQLRISP PSSAAVATEN PAKLIMKREG EIGDKDGLIS AYMMNYGGND ECSVEEKDSK  120
SSENDGDSSG ISSNSIDKVG GGGGSGSRHC RSLSIDSFME NFRGLNGEMS SMVAPPPPPP  180
PQLSMSTSSG ARSAQHSPSS SMDGSTGLFS LEFGNVQFSS EELKKIMANE KLVEFSKADP  240
KRVKRILANR VSAARSKERK TRYIAELEYK VQTLQTEATS LSTQLTFLQR DSADLMNQNN  300
ELRFRLQALD QQAQLRDALN EALRDDVQRL RIAAGMLDMC LPQQVVHNNH AFQTQMSSQN  360
MHQSQQSQEN VGCSHNQPMQ SVKEEGS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021759835.1	8e-83	transcription factor RF2a-like
TrEMBL	A0A1U8AEF1	2e-74	A0A1U8AEF1_NELNU; probable serine/threonine-protein kinase mps1
TrEMBL	M0TPR2	1e-75	M0TPR2_MUSAM; Uncharacterized protein
STRING	XP_010263926.1	3e-75	(Nelumbo nucifera)
STRING	GSMUA_Achr8P12090_001	2e-76	(Musa acuminata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38900.3	9e-51	bZIP family protein