PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca37539.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family bZIP
Protein Properties Length: 332aa    MW: 36943.3 Da    PI: 9.3593
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca37539.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_130.67.4e-104487245
                XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1  2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45
                ++ k  rr+++NReAAr+sR+RKka++++Le    +L++  ++L
  Dca37539.1 44 RDQKSLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQEL 87
                567899*************************9777777666555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.2E-73790No hitNo description
SMARTSM003388.8E-843106IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.3934589IPR004827Basic-leucine zipper domain
PfamPF001706.0E-74687IPR004827Basic-leucine zipper domain
SuperFamilySSF579595.44E-74790No hitNo description
PROSITE patternPS0003605065IPR004827Basic-leucine zipper domain
PfamPF141445.6E-32129204IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009410Biological Processresponse to xenobiotic stimulus
GO:0009627Biological Processsystemic acquired resistance
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MADGSPRTDI STDGDTDERN KQFGSGNFVG PAASDSSDRS KETRDQKSLR RLAQNREAAR  60
KSRLRKKAYV QQLESSRLKL TQLEQELQRA RQQGIFVSSS GDQGHSTGGN GAMAFDVEYS  120
RWLEDHNRQV NELRAAVKAH AGDSELRVIV DGVQSHYEDI FRLKANAAKN DVFHLLSGMW  180
KTPAERCFLW LGGFRSSELL KLLSNQLEPL TEQQLEAIRS LQESSQQAED ALSQGMEALQ  240
QSLAETLSSG SVGPSGSSGN VANYMGQMAM AMGKLGTLEG FIRQADNLRQ QTLQQMHRIL  300
TTRQSARALL AIHDYFSRLR ALSSLWLARP KE
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00349DAPTransfer from AT3G12250Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021858498.10.0transcription factor TGA2 isoform X2
SwissprotQ415580.0HBP1C_WHEAT; Transcription factor HBP-1b(c1) (Fragment)
TrEMBLA0A0K9RI250.0A0A0K9RI25_SPIOL; Uncharacterized protein
STRINGXP_010670518.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12250.21e-168TGACG motif-binding factor 6