PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca37464.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family MYB
Protein Properties Length: 465aa    MW: 51832.2 Da    PI: 8.1753
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca37464.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.99.5e-185499147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g WT+eEd ll  +v+++  ++Wk Ia++++ gRt+ qc +rwqk+
       Dca37464.1 54 KGGWTEEEDNLLTAVVRKFNAKNWKQIAEHFP-GRTDVQCLHRWQKV 99
                     688*****************************.************96 PP
2Myb_DNA-binding61.41.9e-19106152148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+WT+eEd+ ++++v+++G + W+ Ia+ ++ gR +kqc++rw+++l
       Dca37464.1 106 KGPWTKEEDDCIIELVQKHGCRKWSVIAKSLP-GRIGKQCRERWHNHL 152
                      79******************************.*************97 PP
3Myb_DNA-binding52.61e-16158200145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      +++WT++E+ ll+ +++ +G++ W+ Iar ++ gRt++ +k++w+
       Dca37464.1 158 KDAWTKDEESLLIYYHHIFGNK-WAEIARFLP-GRTDNAIKNHWN 200
                      679*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.07249100IPR017930Myb domain
SMARTSM007178.0E-1753102IPR001005SANT/Myb domain
PfamPF002494.5E-165499IPR001005SANT/Myb domain
SuperFamilySSF466891.79E-1655110IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.6E-2356113IPR009057Homeodomain-like
CDDcd001675.06E-1457100No hitNo description
PROSITE profilePS5129430.255101156IPR017930Myb domain
SuperFamilySSF466899.77E-32103199IPR009057Homeodomain-like
SMARTSM007179.3E-17105154IPR001005SANT/Myb domain
PfamPF002498.5E-19106152IPR001005SANT/Myb domain
CDDcd001673.28E-15108152No hitNo description
Gene3DG3DSA:1.10.10.601.7E-27114160IPR009057Homeodomain-like
SMARTSM007171.7E-16157205IPR001005SANT/Myb domain
PROSITE profilePS5129419.757157207IPR017930Myb domain
PfamPF002494.3E-14158200IPR001005SANT/Myb domain
CDDcd001674.12E-12160200No hitNo description
Gene3DG3DSA:1.10.10.601.5E-21161207IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 465 aa     Download sequence    Send to blast
MLKLKMIEVK EEKGWNVKSH DAVTVSSLSD CCGYVTPKSS PLLGTSGPTR RSSKGGWTEE  60
EDNLLTAVVR KFNAKNWKQI AEHFPGRTDV QCLHRWQKVV NPELIKGPWT KEEDDCIIEL  120
VQKHGCRKWS VIAKSLPGRI GKQCRERWHN HLDPAIKKDA WTKDEESLLI YYHHIFGNKW  180
AEIARFLPGR TDNAIKNHWN CSLKKKLDSC SLDESTCKVT PESYRIERNL NDSKLENVAT  240
VYRENCSVSY SSSETCLTEL SLGNSPRVDA RTKTQTLGTS NSVWSDKCDA APVDTELNLS  300
TKPNHEARSL IRASLESPKR SRSCSFSDDY VFGNLDKSFL SLAMSASVED DRQGNKKNKV  360
HGISPSFSYD QMDSPSCFST PIGSGTSTPT TGGSPESLLR NSALSFSTPS IIRRRCSSKP  420
SYSVKRGRES VERCLEASFD IEVEFGGAHC GTSAENSVIA SDCLP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C3e-68432071159MYB PROTO-ONCOGENE PROTEIN
1h89_C3e-68432071159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1315320ESPKRS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019104777.11e-167PREDICTED: uncharacterized protein LOC104892321
RefseqXP_021754127.11e-172transcription factor MYB3R-5-like
TrEMBLA0A438JJL91e-109A0A438JJL9_VITVI; Transcription factor MYB3R-4
STRINGXP_010676520.11e-174(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02320.21e-85myb domain protein 3r-5