PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Dca37426.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
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Family | C3H | ||||||||
Protein Properties | Length: 151aa MW: 17327 Da PI: 6.9891 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 28.9 | 1.9e-09 | 42 | 67 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++C ++++tG+Ck+ + C+++H++ Dca37426.1 42 EQPECEYYMKTGQCKFMSACRYHHPR 67 5799********************96 PP | |||||||
2 | zf-CCCH | 31.2 | 3.9e-10 | 90 | 112 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 +lCr++ + GtCkyG +C ++H+ Dca37426.1 90 KLCRNYEQQGTCKYGRNCLYNHP 112 79********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 0.0016 | 40 | 67 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.314 | 40 | 68 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.14E-5 | 42 | 69 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.4E-7 | 43 | 67 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.868 | 86 | 114 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.5E-6 | 86 | 113 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.41E-7 | 88 | 114 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.4E-7 | 89 | 112 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.1E-7 | 90 | 112 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 151 aa Download sequence Send to blast |
MLPAESSQHF NQNFNNTRKK GTFSDNHQNY QVQNGDFPER PEQPECEYYM KTGQCKFMSA 60 CRYHHPRNRV PTSSQCALSE KGLPLRPGAK LCRNYEQQGT CKYGRNCLYN HPDDYSPEIP 120 AATDSDTPYA TNSGPPAAYN VDSTWDDSWR M |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021742280.1 | 1e-48 | zinc finger CCCH domain-containing protein 43-like | ||||
Swissprot | Q84W91 | 1e-27 | C3H32_ARATH; Zinc finger CCCH domain-containing protein 32 | ||||
TrEMBL | A0A0K9QFH9 | 4e-40 | A0A0K9QFH9_SPIOL; Uncharacterized protein | ||||
STRING | XP_010674845.1 | 2e-42 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47850.2 | 2e-30 | C3H family protein |