PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca37426.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family C3H
Protein Properties Length: 151aa    MW: 17327 Da    PI: 6.9891
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca37426.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.91.9e-094267227
                -S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                 +++C ++++tG+Ck+ + C+++H++
  Dca37426.1 42 EQPECEYYMKTGQCKFMSACRYHHPR 67
                5799********************96 PP

2zf-CCCH31.23.9e-1090112426
                 ---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                 +lCr++ + GtCkyG +C ++H+
  Dca37426.1  90 KLCRNYEQQGTCKYGRNCLYNHP 112
                 79********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.00164067IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.3144068IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.14E-54269IPR000571Zinc finger, CCCH-type
PfamPF006424.4E-74367IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.86886114IPR000571Zinc finger, CCCH-type
SMARTSM003565.5E-686113IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.41E-788114IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-789112IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-790112IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 151 aa     Download sequence    Send to blast
MLPAESSQHF NQNFNNTRKK GTFSDNHQNY QVQNGDFPER PEQPECEYYM KTGQCKFMSA  60
CRYHHPRNRV PTSSQCALSE KGLPLRPGAK LCRNYEQQGT CKYGRNCLYN HPDDYSPEIP  120
AATDSDTPYA TNSGPPAAYN VDSTWDDSWR M
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021742280.11e-48zinc finger CCCH domain-containing protein 43-like
SwissprotQ84W911e-27C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLA0A0K9QFH94e-40A0A0K9QFH9_SPIOL; Uncharacterized protein
STRINGXP_010674845.12e-42(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.22e-30C3H family protein