PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca37424.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family C3H
Protein Properties Length: 511aa    MW: 56635.5 Da    PI: 5.3669
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca37424.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.21.4e-08112134426
                 ---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                 + C+f+ + GtCk+G +C+++H+
  Dca37424.1 112 ADCSFYIKAGTCKFGQNCRYNHP 134
                 68********************8 PP
2zf-CCCH31.92.2e-10163184526
                 --SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                 +C++f+  G CkyG++CkF+H+
  Dca37424.1 163 ECKYFQTPGGCKYGETCKFIHS 184
                 7********************7 PP
3zf-CCCH29.99.6e-10208229526
                 --SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                 +C f++r+G C yG++C+F+H+
  Dca37424.1 208 ECVFYLRNGSCGYGSNCRFNHP 229
                 7********************9 PP
4zf-CCCH26.79.9e-09402427227
                 -S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                  +++C ++++tG+Ck+ + C+++H++
  Dca37424.1 402 EQPECEYYMKTGQCKFMSACRYHHPR 427
                 5799********************96 PP
5zf-CCCH28.92e-09450472426
                 ---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                 +lCr++ + GtCkyG +C ++H+
  Dca37424.1 450 KLCRNYEQQGTCKYGRNCLYNHP 472
                 79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.004108136IPR000571Zinc finger, CCCH-type
SMARTSM003560.02108135IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.32E-5112136IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-5112134IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.098158186IPR000571Zinc finger, CCCH-type
SMARTSM003560.0011159185IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-5163186IPR000571Zinc finger, CCCH-type
PfamPF006426.6E-8163184IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.8E-7164185IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.094203231IPR000571Zinc finger, CCCH-type
SMARTSM003564.0E-6203230IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.89E-6205230IPR000571Zinc finger, CCCH-type
PfamPF006425.8E-7208229IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-4209228IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.314400428IPR000571Zinc finger, CCCH-type
SMARTSM003560.0016400427IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.67E-5403429IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-6403427IPR000571Zinc finger, CCCH-type
SMARTSM003565.5E-6446473IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.868446474IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.79E-6448474IPR000571Zinc finger, CCCH-type
PfamPF006427.2E-7449472IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-6450472IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 511 aa     Download sequence    Send to blast
MGTWEEESSE LFESRNEINK DISSNGTHSG EIDVEVVDGN GNVDGDESHD NESGVVIEEG  60
GLVKQLESLE FRDNGSDGDK GDGEQLGEYD GANDGDGDEG KNEVYPLRPY AADCSFYIKA  120
GTCKFGQNCR YNHPSKRDYQ HVGDTNQGYG ESNELAGDAG KIECKYFQTP GGCKYGETCK  180
FIHSASTVGK ENVELNFLGL PIRPSAQECV FYLRNGSCGY GSNCRFNHPD PSSVNEFQSA  240
NSLENGKPVR GGINLPRNYG VESSPSFRGL YQGSSEPSNS MNTRYGPPYA PDRRPYPQSQ  300
VNTSSPANKF PRPHQAVNNF PKRGDPSTQS ACRYNHPSAQ KSNLRPPPLS SKGLYSRPPP  360
MLPAESSQHF NQNFNNTRKK GTFSDNHQNY QVQNGDFPER PEQPECEYYM KTGQCKFMSA  420
CRYHHPRNRV PTSSQCALSE KGLPLRPGAK LCRNYEQQGT CKYGRNCLYN HPDDYSPEIP  480
AATDSDTPYA TNSGPPAAYN VDSTWDDSWR M
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021742280.11e-149zinc finger CCCH domain-containing protein 43-like
TrEMBLA0A0K9QFH91e-133A0A0K9QFH9_SPIOL; Uncharacterized protein
STRINGXP_010674845.11e-142(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63260.16e-71C3H family protein