PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Dca37074.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
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Family | B3 | ||||||||
Protein Properties | Length: 709aa MW: 78410.6 Da PI: 6.5786 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 49.7 | 6.9e-16 | 222 | 321 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 f+kvl+ sdv+++grl+lpk +ae++ + +k+e++ +++ d + ++W ++++y+ + ++ yvl+ G + ++ +k+gD+v+F ++ +++l ++ Dca37074.1 222 FEKVLSASDVSSLGRLILPKACAEAYfpSVSKPEGFPIKVLDVNRKEWGFQFRYWPNTSSrvYVLE-GVAQCLQSMLVKAGDTVTFCCTE-PDGKLIMS 318 99**************************667789999*****************555555547777.*******************9544.77777776 PP EE- CS B3 96 vfr 98 +++ Dca37074.1 319 FRK 321 665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.3E-25 | 213 | 325 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.06E-17 | 219 | 322 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.23E-22 | 220 | 321 | No hit | No description |
Pfam | PF02362 | 2.1E-13 | 222 | 321 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.5E-15 | 222 | 323 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 9.418 | 222 | 323 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS51050 | 14.181 | 453 | 503 | IPR011124 | Zinc finger, CW-type |
Pfam | PF07496 | 1.9E-10 | 458 | 500 | IPR011124 | Zinc finger, CW-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 709 aa Download sequence Send to blast |
MAPKKCLNIH YCGTTTCAQW KTGWRLHSGE LANLCDICGY AFEQRVFCEE FHIDESGWRN 60 CVTCGKRLHC GCIASLHLIT LVPNGVKCSY DCADNSVPAE NAALGLTNRE SPISPIAETE 120 AQPNQAITSG VSSGNLQLTP AIVTDERDQG NMSAAFNQDS ASLALTSTPP TRPSALPSNE 180 FLSMRTQLCL ARCSGQGQGR QARQQLLSRY WPSSNSSVIP LFEKVLSASD VSSLGRLILP 240 KACAEAYFPS VSKPEGFPIK VLDVNRKEWG FQFRYWPNTS SRVYVLEGVA QCLQSMLVKA 300 GDTVTFCCTE PDGKLIMSFR KSSDSSAQTT IGSADAPTNA LPRQSASMAV IRDVHSIEQS 360 RGLPKVVLSC LPVVKTRSQK GRDIEAKSNE KSPPVYTQQH AQALKLTLEE VQGMLCPPPN 420 ENPNIVEVEG FEIEEYKDPP VLGKRSVFAT RSLGETDQWA QCDNCSKWRR LPSDFLLPPK 480 WKCTDNSWDT ARCFCSAPEE LSPEDREDLI KLSKGSKKKK MRMVAKVMQE TENSVINLED 540 DPTNEAGTSA GATSSKVQNK EAADQPLHMT KLRSIGLNSR ELDRPCSVMQ AHSEIEYCQP 600 PQRFAMKKRV DCEWMFKRLD DQKNVTPEFV NGLKEFFEXA PEELSPEDRE DLIKLSKGSK 660 KKKMRMVAKV MQETENSVIN LEDDPTNEAG TSAGATSSKV QNKEAADQP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9a_A | 2e-45 | 215 | 326 | 17 | 128 | B3 domain-containing transcription repressor VAL1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021766999.1 | 1e-153 | B3 domain-containing transcription repressor VAL2-like |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32010.1 | 3e-96 | HSI2-like 1 |