PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca36999.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family CPP
Protein Properties Length: 1086aa    MW: 118789 Da    PI: 5.5366
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca36999.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR51.12.6e-16430467340
         TCR   3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                 +k+CnCkkskClk+YCeCfaag++C e C+C+dC+Nk 
  Dca36999.1 430 CKRCNCKKSKCLKLYCECFAAGVYCVEPCSCQDCFNKP 467
                 89**********************************96 PP

2TCR50.34.7e-16514552139
         TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                 ++k+gCnCkks+ClkkYCeC++ g+ Cs +C+Ce+CkN 
  Dca36999.1 514 RHKRGCNCKKSNCLKKYCECYQGGVGCSINCRCEGCKNA 552
                 589***********************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011147.7E-18428469IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163437.65429554IPR005172CRC domain
PfamPF036381.3E-11431466IPR005172CRC domain
SMARTSM011143.7E-17514555IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.8E-11516552IPR005172CRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009934Biological Processregulation of meristem structural organization
GO:0048444Biological Processfloral organ morphogenesis
GO:0051302Biological Processregulation of cell division
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 1086 aa     Download sequence    Send to blast
MRFHFPFNSF SHPQPPLTTT NLHDYDHHHN NHHIATPSPL GGGSGRVNGL ILEFWHQVAD  60
PVKPQCASND GNKNSEADPG IEAELQPNGS TNADVDVEKD SVEPLCDVSE LTRALTYDSG  120
SPDYWTAATS SVACEPNSSN AIVPFVHDPS VRGSFGTEVN SQQMNHDNEE TSCDRESLIS  180
CNNNLFVFDS PNDGETLKGS FRKSLEEETN VYASLLSRFN SNEASEVKSS CHPTSGGCNE  240
AHEFACQSTQ PTEASEFKDI DQQPEHLRIS SVHEYFSVEA GDKPGNENFN GLYRGVRRRC  300
LTFDIARPKK GMDGVPFVNS LSSLQSEEKS VTPEGDSSRC VFPGIGLHLN ALAAASKDRG  360
ISYQEMISPT SHEPPPNNAL VLFEQDGVPT ENGTELVEDC AQLSANADEQ NSNSPKKKRR  420
KFESDEGGAC KRCNCKKSKC LKLYCECFAA GVYCVEPCSC QDCFNKPIHE ETVLATRKQI  480
ESRNPLAFAP KVIRTSDSAP EVGEDSTKTP ASARHKRGCN CKKSNCLKKY CECYQGGVGC  540
SINCRCEGCK NAFGRKDGST FLAIEAETED DQIPEKRTTE KSLDHPACRN DDNKSSEFSL  600
PKTPLTHYRQ SVLLQTSSKG KPPRSSLVTI SSTSSSHLND EQGRSKFLPA QSKNEKHLQN  660
VPEDEIPAVL QNSSPPSSSL QTLSPNSKRV SLPQHGKGQS PKLRTSPDYE RGYNQTFGSS  720
NGGPVVSLNV DGYDIVNQAP SGGNLAHANT GLNNGTEGWL AGSSPMNNST DSSPEDSGRA  780
WPYGSSSDYE YDASHDDEAR TEIVQGEDDS DHKVNDKSNK KSGTTVVERW IRFGDNSEDV  840
GKDKGKRKAT SDPKAALLPL GVLETKSTAT SFLQDLDKRL KRDIEAVEMR KINAKRAMIR  900
EGKKEANLGQ EFFTPLLIFD LEDSLGNKRE TMKMEEIPEG KGKEVMNPYA KEDSRESGAG  960
KRGVTEKRWI KNPIDEANSF LKKFSNWQNS VKKRKAVSDP QLALVPDYFL KSVDLSKIYL  1020
KGVNKRPRVG GANNEASSTS NSNSGGGSFQ IRIDTVIVDS DSTSDGSTAR DNGDSEVGLE  1080
QPPAEE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A5e-1643155112120Protein lin-54 homolog
5fd3_B5e-1643155112120Protein lin-54 homolog
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1415419KKKRR
2415420KKKRRK
3416420KKRRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00624PBMTransfer from PK22848.1Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021859215.10.0protein tesmin/TSO1-like CXC 2
TrEMBLA0A0K9R5V10.0A0A0K9R5V1_SPIOL; Uncharacterized protein
STRINGXP_010694035.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14770.11e-101TESMIN/TSO1-like CXC 2