PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca36797.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family GRAS
Protein Properties Length: 512aa    MW: 55851 Da    PI: 6.0234
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca36797.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS2707.8e-831485113374
        GRAS   3 elLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                 + L+++A+a++s+d+++++ lL+rl+++ +sp g+p+qR+a+yf+eAL+++ +          +p + s+++++++++a+k++  +sPi  fs ++aNq
  Dca36797.1 148 DDLVRAAHALESNDTHQVHVLLTRLNQRlRSPVGRPLQRAAFYFKEALHNHSTT-------VTTPAKLSSYDVVQKIHATKAYAAISPISLFSAFAANQ 239
                 679************************99*********************9998.......44666777799*************************** PP

        GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRp...egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
                 aIleav+g++ +Hi+Dfd++ G++W++++++L +++     +  lRiT+++++e     e + ++e+L++fA+el+++f+++++ + ++e  ++++ ++
  Dca36797.1 240 AILEAVDGASIIHIVDFDVGFGGHWASFMRELVDKTldkLTQIVLRITAIVPEE--LDVECKLVRENLSQFARELNLNFHIDFVPTPNFEISSFKSVKF 336
                 **********************************9975334569********66..8899***********************8888************ PP

        GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe..adhnsesFlerflealeyysalfdsleaklpres....eerikvErel 289
                   gE++aV+l+ ++++ l  ++ +++    +   + ++sP v+vvve+e  +d +++sF   f+  +e+++ + +sl+a ++       +  +k+E ++
  Dca36797.1 337 IDGEKIAVHLSPSVFHRL-ARGVITN----FTAELCGVSPCVIVVVEKEigIDAGTASFGVSFVAGIEFFTGIIESLDAAAAGGLngggDCVRKIETFV 430
                 *************99999.4444555....9******************44455999********************666443333677999******* PP

        GRAS 290 lgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 l+++i  +v ++ a      ++ ++Wre++ +aG++ v +s++a  q ++llr+ ++ g++v +++g+++l W+drpLv++SaW+
  Dca36797.1 431 LRPKIAAAVEAAAAG----GRRGATWREAFVAAGMRVVGFSQFADFQSECLLRRAQVGGFHVAKRHGEMMLFWHDRPLVATSAWK 511
                 **********99998....67779************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098535.527120491IPR005202Transcription factor GRAS
PfamPF035142.7E-80148511IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 512 aa     Download sequence    Send to blast
MKVPVSAATT LTTPTSNPIN NNNEPSSVTE QQCNPAKLPS GARNDHDHDQ NQDSRPTIEL  60
DNLEGWDSIL CELGLNDDNN SSNPNNSKLL LSNFINPSNP LMTQILPDFG SSHPSDYSSD  120
FSYTPNFGPL DQPPQHNSTN TNSLDFLDDL VRAAHALESN DTHQVHVLLT RLNQRLRSPV  180
GRPLQRAAFY FKEALHNHST TVTTPAKLSS YDVVQKIHAT KAYAAISPIS LFSAFAANQA  240
ILEAVDGASI IHIVDFDVGF GGHWASFMRE LVDKTLDKLT QIVLRITAIV PEELDVECKL  300
VRENLSQFAR ELNLNFHIDF VPTPNFEISS FKSVKFIDGE KIAVHLSPSV FHRLARGVIT  360
NFTAELCGVS PCVIVVVEKE IGIDAGTASF GVSFVAGIEF FTGIIESLDA AAAGGLNGGG  420
DCVRKIETFV LRPKIAAAVE AAAAGGRRGA TWREAFVAAG MRVVGFSQFA DFQSECLLRR  480
AQVGGFHVAK RHGEMMLFWH DRPLVATSAW KC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A4e-181285101378Protein SCARECROW
5b3h_A5e-1815251024377Protein SCARECROW
5b3h_D5e-1815251024377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010667697.10.0PREDICTED: scarecrow-like protein 15
SwissprotO232101e-129SCL15_ARATH; Scarecrow-like protein 15
TrEMBLA0A0J8B5W80.0A0A0J8B5W8_BETVU; Uncharacterized protein
STRINGXP_010667697.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36710.11e-112GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]