PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Dca3631.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
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Family | Trihelix | ||||||||
Protein Properties | Length: 651aa MW: 72917.5 Da PI: 7.4708 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 97.5 | 1.2e-30 | 46 | 130 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+laL+++r++m+ +r+++lk+plWeevs+km+e g++rs+k+Ckek+en+ k++k++k+g+ +++ + +t+++fdqlea Dca3631.1 46 RWPRQETLALLKIRSDMDGVFRDSSLKGPLWEEVSRKMAELGYHRSSKKCKEKFENVYKYHKRTKDGRVGKS--DGKTYRFFDQLEA 130 8********************************************************************964..5557*******85 PP | |||||||
2 | trihelix | 109.4 | 2.3e-34 | 460 | 545 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k ev aLi++r++m+e++++++ k+plWee+s+ m++ g++r++k+Ckekwen+nk++kk+ke++kkr +e+s+tcpyf+ql+a Dca3631.1 460 RWPKPEVEALINLRTKMDEKYQENCPKGPLWEEISSSMKQLGYNRNAKRCKEKWENINKYFKKVKESNKKR-PEDSKTCPYFHQLDA 545 8*********************************************************************8.99***********85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.922 | 39 | 103 | IPR017877 | Myb-like domain |
SMART | SM00717 | 0.021 | 43 | 105 | IPR001005 | SANT/Myb domain |
CDD | cd12203 | 1.07E-26 | 45 | 110 | No hit | No description |
Pfam | PF13837 | 5.0E-20 | 45 | 130 | No hit | No description |
SMART | SM00717 | 4.2E-4 | 457 | 519 | IPR001005 | SANT/Myb domain |
CDD | cd12203 | 6.14E-31 | 459 | 524 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.1E-4 | 459 | 516 | IPR009057 | Homeodomain-like |
Pfam | PF13837 | 1.1E-22 | 459 | 546 | No hit | No description |
PROSITE profile | PS50090 | 7.584 | 459 | 517 | IPR017877 | Myb-like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 651 aa Download sequence Send to blast |
MLGDGGSSVP PETDTGVGSS SIMSPDGGGS GGGDFYEGDR STGGNRWPRQ ETLALLKIRS 60 DMDGVFRDSS LKGPLWEEVS RKMAELGYHR SSKKCKEKFE NVYKYHKRTK DGRVGKSDGK 120 TYRFFDQLEA FEQHHSSPSH LPPFPPTTPR PQPQSSSVHA PVPVTMVFPA GMSSPAGGVT 180 TIPSHPHQQQ QINFTTTSTP ETRWTVSPNY HHQYQQQMEN VSSPSVTHSS SSSTSSDEEV 240 LGRRKRKRKW KDFFGRLMKE VMDKQEVLQA RFLEAVERRE HYRLVREEAW KAQEMGRLNR 300 EHEILVQERS MATAKDAALI DLLKKLSDQH QIPMPFPVHI HPHHELQSQP RNVVPVVTST 360 VVTTVSPLPS PPPSLPKPIS EVVQAPLVTA QFHVQETPVS LPVPVPVPAQ TQAIPQPKPL 420 TQIHPQPFQQ RVMVLANANA DTHHESNNGG ENQLQPSSSR WPKPEVEALI NLRTKMDEKY 480 QENCPKGPLW EEISSSMKQL GYNRNAKRCK EKWENINKYF KKVKESNKKR PEDSKTCPYF 540 HQLDALYRNK TATTYAAPPL QQAAVKPENL NTMGPIMAQP DQRWRHPHDP HHRVVDAGSG 600 NETDDDEEDD DDDDQGNGYE IVANNGNNSG ICSMCTSTAT AATTTATTTA E |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 242 | 247 | RRKRKR |
2 | 242 | 248 | RRKRKRK |
3 | 243 | 248 | RKRKRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that binds specific DNA sequence. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021848795.1 | 0.0 | trihelix transcription factor GTL1 | ||||
Swissprot | Q39117 | 8e-79 | TGT2_ARATH; Trihelix transcription factor GT-2 | ||||
TrEMBL | A0A0K9RCU7 | 0.0 | A0A0K9RCU7_SPIOL; Uncharacterized protein | ||||
STRING | XP_009618661.1 | 1e-168 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76880.1 | 2e-54 | Trihelix family protein |