PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca36010.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family SBP
Protein Properties Length: 358aa    MW: 38644.6 Da    PI: 8.0474
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca36010.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP136.39.1e-4356131176
                 --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS
         SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 
                 +CqvegC++dls+ k y++rhkvC +hsk+p v+v+g++qrfCqqCsrfh+l efD++krsCrrrLa+hnerrrk+
  Dca36010.1  56 RCQVEGCNVDLSDSKAYYSRHKVCGMHSKSPLVVVAGIHQRFCQQCSRFHQLPEFDQGKRSCRRRLAGHNERRRKP 131
                 6*************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.103.5E-3451118IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.11154131IPR004333Transcription factor, SBP-box
SuperFamilySSF1036126.15E-4155135IPR004333Transcription factor, SBP-box
PfamPF031101.4E-3257130IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0048653Biological Processanther development
GO:2000025Biological Processregulation of leaf formation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MSLTEEGSSK GCSSDCLNSL QFGQKIYFED SSTSTGTGVK GKKNGKNMVQ YGQPPRCQVE  60
GCNVDLSDSK AYYSRHKVCG MHSKSPLVVV AGIHQRFCQQ CSRFHQLPEF DQGKRSCRRR  120
LAGHNERRRK PPPGSLLSSR LGRLSSSFFG DSTNKSGFLL DFSSYSRQSG RDLWPGSKTS  180
EAVSGCPSTS LVKFHHDMWP GYSEDPPETY PRGSAVETSF SIPSGECITG VSSDSTCALS  240
LLSNQTWGST NSASDTGLGN LMNHGGASMS QSAPTHTVTV AHLPNNYYHR SWNFKGGNEA  300
NIGGLPAPST DHFGVGQFSH ALDSDLFMDQ VHGGCHYVGI DHSSGYSSAA ASQVHWSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A4e-30571301184squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00307DAPTransfer from AT2G42200Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021770402.11e-136squamosa promoter-binding-like protein 17
SwissprotA3C0575e-63SPL17_ORYSJ; Squamosa promoter-binding-like protein 17
TrEMBLA0A0K9QU541e-126A0A0K9QU54_SPIOL; Uncharacterized protein
STRINGXP_010672689.11e-127(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42200.17e-42squamosa promoter binding protein-like 9