PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca36007.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

G2-like

Protein Properties

Length: 295aa MW: 32701 Da PI: 7.0079

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca36007.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	90.7	1.3e-28	238	288	1	51
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 k r+rWt+eLHe+Fve+v++LGG+ekAtPk+il+lm+ +gLt+ hvkSHLQ Dca36007.1 238 KSRIRWTTELHEKFVECVNRLGGAEKATPKAILKLMNSDGLTIFHVKSHLQ 288 68************************************************* PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	8.24E-15	236	289	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	6.6E-25	236	288	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	6.2E-21	238	289	IPR006447	Myb domain, plants
Pfam	PF00249	3.0E-8	242	288	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 295 aa Download sequence Send to blast
MSHQRNDFHG QVMNDCTTEF VNVRQSWSIG ACLGDGVSNT VPGPNVSSTI MNRYSPPLLP 60 GERFVGSLPY HEQQISSPTF SSAVQSSKNY DQDYRSYPGS TKDGFSVELA DNQDGSDFRS 120 RTALESAAKA LLYGDQNQFY GSEKIYDNNS HNNNSPCGDY SGNVQTQQIH NKFLLDFVNL 180 DARSYSFSTN EKQDFRFFDK SYMLPHGELS FSIQPGKQAP SSVGVGSLSS SRATISNKSR 240 IRWTTELHEK FVECVNRLGG AEKATPKAIL KLMNSDGLTI FHVKSHLQVS ISSTN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-20	238	288	2	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-20	238	288	2	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	1e-20	238	288	1	51	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-20	238	288	1	51	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-20	238	288	1	51	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-20	238	288	1	51	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-20	238	288	2	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-20	238	288	2	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-20	238	288	2	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-20	238	288	2	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-20	238	288	2	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-20	238	288	2	52	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021770386.1	1e-100	myb family transcription factor PHL5-like
TrEMBL	A0A0K9RV66	3e-89	A0A0K9RV66_SPIOL; Uncharacterized protein
STRING	XP_010672678.1	1e-95	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06800.2	5e-28	G2-like family protein