PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca35739.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family ERF
Protein Properties Length: 354aa    MW: 39509.8 Da    PI: 4.8477
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca35739.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.73.4e-19119168255
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 +y+G+r+++ +g+W+AeIrdp++     r++lg++ taeeAa+a++a +++++g
  Dca35739.1 119 QYRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTYNTAEEAARAYDAEARRIRG 168
                 69*******.**********954...4************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.29E-32119177No hitNo description
SMARTSM003805.0E-38119182IPR001471AP2/ERF domain
PROSITE profilePS5103224.065119176IPR001471AP2/ERF domain
SuperFamilySSF541714.12E-22119177IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.7E-32119177IPR001471AP2/ERF domain
PRINTSPR003672.2E-11120131IPR001471AP2/ERF domain
PfamPF008476.0E-12120168IPR001471AP2/ERF domain
PRINTSPR003672.2E-11142158IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MCGGAIISGF IDDKSRKAAE QFLWPDLNGG DLRRKFSGYS KPSKSIIDHH VDVVVDDDDD  60
EVKFEADFKE FKDDESDFGY KVHVSPPKFN NFSGFSNVPK PVEIKSQAEK SAKRKRKNQY  120
RGIRQRPWGK WAAEIRDPRK GVRVWLGTYN TAEEAARAYD AEARRIRGKK AKVNFPEEVT  180
ESSLPKRIVK PKSQKATSVA NPNPSPVEVN HNGQFFSGVP VMEEKPQPLY FTSDQGSNSF  240
GCSDIGWGEN GPKTPDITSY FSSAFEADET RVVEDGSGNM KMKSESGSAV PVPSEEMSGD  300
DFESQLQFLD IPYLDDNNWT VDALLNANDV TQDGLTNVDL WNFADFSTMP GGIF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-21119179263ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021720392.11e-111ethylene-responsive transcription factor RAP2-12-like
RefseqXP_021720393.11e-111ethylene-responsive transcription factor RAP2-12-like
TrEMBLB6UZ631e-106B6UZ63_9CARY; Dehydration-responsive element binding protein
STRINGXP_010685231.11e-107(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53910.31e-57related to AP2 12