PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca35398.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family MIKC_MADS
Protein Properties Length: 251aa    MW: 28727.5 Da    PI: 9.8587
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca35398.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.21.6e-312877150
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyey+
  Dca35398.1 28 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYA 77
                79***********************************************8 PP
2K-box106.82.5e-35991968100
       K-box   8 s.leeakaeslqqelakLkkeienLq....reqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                   ++ea+a+++qqe+akL+ +i+++        R+l+Ge+L++Ls+keL++Le++Lek++++iRskKnell+++ie +qk+e +l+++n+ Lr+k++e
  Dca35398.1  99 GsVAEANAQYYQQEAAKLRGQIRTITdsnrLLSRQLMGEGLSDLSMKELKNLESKLEKGISRIRSKKNELLFAEIEFMQKREIDLHNHNQFLRAKIAE 196
                 3499**********************65543469*************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006633.5712080IPR002100Transcription factor, MADS-box
SMARTSM004323.3E-412079IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.58E-332192IPR002100Transcription factor, MADS-box
CDDcd002652.62E-442195No hitNo description
PRINTSPR004044.7E-332242IPR002100Transcription factor, MADS-box
PROSITE patternPS0035002276IPR002100Transcription factor, MADS-box
PfamPF003199.5E-272976IPR002100Transcription factor, MADS-box
PRINTSPR004044.7E-334257IPR002100Transcription factor, MADS-box
PRINTSPR004044.7E-335778IPR002100Transcription factor, MADS-box
PfamPF014862.2E-23104194IPR002487Transcription factor, K-box
PROSITE profilePS5129714.22106200IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0048440Biological Processcarpel development
GO:0048443Biological Processstamen development
GO:0048497Biological Processmaintenance of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MEFSSQITRE EGSPSSQRKL GRGKIEIKRI ENTTNRQVTF CKRRNGLLKK AYELSVLCDA  60
EVALIVFSSR GRLYEYANHS VKGTIERYKK ACSDSTGAGS VAEANAQYYQ QEAAKLRGQI  120
RTITDSNRLL SRQLMGEGLS DLSMKELKNL ESKLEKGISR IRSKKNELLF AEIEFMQKRE  180
IDLHNHNQFL RAKIAENERA QQSMRLMPGG SSEYELAPPP QSFDSRNYFQ VNALQPNEHY  240
SRQDQTPLQL V
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P2e-202088169Myocyte-specific enhancer factor 2B
1tqe_Q2e-202088169Myocyte-specific enhancer factor 2B
1tqe_R2e-202088169Myocyte-specific enhancer factor 2B
1tqe_S2e-202088169Myocyte-specific enhancer factor 2B
6c9l_A2e-202088169Myocyte-specific enhancer factor 2B
6c9l_B2e-202088169Myocyte-specific enhancer factor 2B
6c9l_C2e-202088169Myocyte-specific enhancer factor 2B
6c9l_D2e-202088169Myocyte-specific enhancer factor 2B
6c9l_E2e-202088169Myocyte-specific enhancer factor 2B
6c9l_F2e-202088169Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00609ChIP-seqTransfer from AT4G18960Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021723464.11e-160floral homeotic protein AGAMOUS-like isoform X2
SwissprotQ401681e-136AG_SOLLC; Floral homeotic protein AGAMOUS
TrEMBLA0A0F6T2Y11e-164A0A0F6T2Y1_SILDI; SDM1
STRINGXP_010687169.11e-154(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18960.11e-107MIKC_MADS family protein
Publications ? help Back to Top
  1. Pan IL,McQuinn R,Giovannoni JJ,Irish VF
    Functional diversification of AGAMOUS lineage genes in regulating tomato flower and fruit development.
    J. Exp. Bot., 2010. 61(6): p. 1795-806
    [PMID:20335407]
  2. Gimenez E, et al.
    TOMATO AGAMOUS1 and ARLEQUIN/TOMATO AGAMOUS-LIKE1 MADS-box genes have redundant and divergent functions required for tomato reproductive development.
    Plant Mol. Biol., 2016. 91(4-5): p. 513-31
    [PMID:27125648]