PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca35201.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family WOX
Protein Properties Length: 478aa    MW: 51972.5 Da    PI: 6.6104
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca35201.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox551.4e-1744104257
                 T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
    Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                 ++R+++++eq+++Le+ F++   +p ++e++++ ++l    ++ +++V++WFqNr+ + k+
  Dca35201.1  44 KPRWNPKPEQIRILEAIFNSgMVNPPRDEIRRIRTQLqeygQVGDANVFYWFQNRKSRSKN 104
                 89*****************99*************************************995 PP
2Wus_type_Homeobox111.45e-3643106265
  Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        +++RW+P+peQi+iLe++++sG+++P+++ei+ri+++L+eyG+++d+NVfyWFQNrk+R+++kq
         Dca35201.1  43 PKPRWNPKPEQIRILEAIFNSGMVNPPRDEIRRIRTQLQEYGQVGDANVFYWFQNRKSRSKNKQ 106
                        689***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007110.4340105IPR001356Homeobox domain
SuperFamilySSF466891.71E-1141108IPR009057Homeodomain-like
SMARTSM003891.4E-842109IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.5E-743110IPR009057Homeodomain-like
CDDcd000862.25E-843106No hitNo description
PfamPF000464.0E-1544103IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0009735Biological Processresponse to cytokinin
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0010075Biological Processregulation of meristem growth
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 478 aa     Download sequence    Send to blast
MASSNRHWPS MFKSKPINHH SCSRSSDNSS FSSGCEERST PEPKPRWNPK PEQIRILEAI  60
FNSGMVNPPR DEIRRIRTQL QEYGQVGDAN VFYWFQNRKS RSKNKQRNLQ PKTATTNTVS  120
TTTATSSSSS SSDKNSPNNK STKNNINNII GSGGGGGGEH FVNSPTSVNQ CSSNYFQQLI  180
TPNNHLQFHE FVSHEPVYFP LHQNGASVLG NNNNNNNNNT NTNNNNFNPN LCFAHNNNNN  240
MNGGDHVQLT LPCDETVGGF SSLLFGEIFN GGGGGGGLKG DDEVEKLKFQ QELSFLVSTQ  300
ENNNNNNNNN NNNNNNNNNN NNNNNNNNNG CTTLPSSSHV VSTPISTAIT TDLGHFVGEA  360
GGMPGKMMVF INGMAIEVPS GSFNVKEEFG DDVMLVHAST GQPVVTNEWG VTLHGLQQGA  420
SYYLVGAHLV ASPLLHKLDN APDILASDFP YQTSSQAIGT SYALSQAIGT TKEETEAR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33880.15e-50homeobox-3