PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Dca35023.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
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Family | C3H | ||||||||
Protein Properties | Length: 378aa MW: 42247.1 Da PI: 4.4011 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 35.3 | 1.9e-11 | 178 | 201 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 + C ++ +tGtCk+G +C+F+H+ Dca35023.1 178 VVDCTYYTKTGTCKFGKNCRFNHP 201 689********************9 PP | |||||||
2 | zf-CCCH | 33.1 | 9.2e-11 | 230 | 251 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++++ G+CkyGd C+++H+ Dca35023.1 230 ECKYYQTAGWCKYGDACRYSHS 251 6********************7 PP | |||||||
3 | zf-CCCH | 30.3 | 7.4e-10 | 275 | 297 | 5 | 27 |
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 +C ++++ G C yG++C+F+H++ Dca35023.1 275 ECAYYLQHGSCAYGASCRFNHPE 297 7********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 14.183 | 175 | 203 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 8.6E-6 | 176 | 202 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.7E-9 | 178 | 201 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 7.59E-6 | 180 | 202 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 8.1E-5 | 181 | 200 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.422 | 225 | 253 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.0E-4 | 226 | 252 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.3E-8 | 230 | 251 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.01E-6 | 230 | 254 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.0E-6 | 231 | 252 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.7E-4 | 270 | 297 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.615 | 270 | 298 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 7.06E-6 | 272 | 298 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.7E-7 | 275 | 297 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.3E-4 | 276 | 296 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 378 aa Download sequence Send to blast |
MATCEEESSA SFESRNAIIM DADNDVEVIK VMVNGDVSVH GDGDECCRTY VVVEEDGVVE 60 QVEKLELQSN CSNGSKIEEE KREESIECND DNDVADIKVT VNGDVSSHAD GDECRTYVVV 120 EEDGAVEQQL ERLELQSNCS NGSKIEEEKR EEHVECNDDN NVAENKAKSR AYSLRPYVVD 180 CTYYTKTGTC KFGKNCRFNH PLWRAFKPGG DKEKTCEESI ESVDDATKIE CKYYQTAGWC 240 KYGDACRYSH SARKIEKEYL QLNFLGLPIR STAQECAYYL QHGSCAYGAS CRFNHPEPSA 300 VNEHDKSGDS LGNDNFVEPG VNSSRNCRGV SLQSFGGLQQ HASMSHNDID LRNGSNDMMS 360 SYHQRLPQTP ETDPSQVQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
STRING | XP_010674845.1 | 3e-59 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48440.1 | 1e-37 | C3H family protein |