PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca34818.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family C3H
Protein Properties Length: 723aa    MW: 81113.6 Da    PI: 5.3583
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca34818.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.21.2e-07103128127
                 --S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                 +kt++C +f++ G C+ G rC+F Hgp
  Dca34818.1 103 KKTVPCVYFQA-GSCSKGYRCQFLHGP 128
                 59*****9999.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.4742251IPR000571Zinc finger, CCCH-type
SMARTSM003560.152350IPR000571Zinc finger, CCCH-type
PfamPF156631.8E-112380No hitNo description
SMARTSM003560.0025379IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.6435380IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.8E-797128IPR000571Zinc finger, CCCH-type
SMARTSM003566.5E-7102128IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.831102129IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-4103128IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.72E-5103127IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 723 aa     Download sequence    Send to blast
MAAVSKQPPQ PSSSSPSKDD SWKRNTDCFY FLATPSSCKK GSECEYRHSE AARKNPVDCY  60
YWLSGTCSMN ANCGFRHPPL DVLVPPVPPF AQALTSMPQN ATKKTVPCVY FQAGSCSKGY  120
RCQFLHGPVP QPNAKQPLPT TAAGKEAPAL KKIVGGTEKD ESQPKMSFHA NASKFIRNAN  180
AAAPEVAQPR PIEVASTIKR NIPRGVFDET PHVRDMAPPV AVNGSFRSRM EPSHRAASVD  240
DQYYQNGRDV DDSLRESSPG FDVLVDDMPE EDEYFHDEDQ YVQVRGQEGR RSSEFDGRHH  300
ADYESVVHVD HDVYRSERGY NAYDGLRDKY AREHREVSSE RPPAHDRRAP PYRSESTDYT  360
RNSTDLRHRL SKQQRGMRLR SVVSPDYHQK DQGDCSSRRD TRRSPTRFYD VGSRLQGRIK  420
LPRRSPPMGD RNAYIGRDHE RERNLHRVSP NRPRVSSLQG RLRDRLGTRV QEDSFEGRRA  480
RGQKRRDSMV QDIGDAFSAP KRLSEIAGNK RFDNKNQQLR DTVLGSSRRT EGDISFDGPK  540
PLSEILKRKR SAASTASTND VNCDNKEARS GVHSNEDAEQ PTVVSSAPVQ IQIQSVVVEN  600
NQPLVTEACD EDDAKFSNKK VKTNENESSL PDEQKQHEVE DDEGVFGGVE GEAEVEEGFN  660
QVDGEEAEVD EEFEQGDGEY DYEHDDDVDG YNLNEGDVAG NEGEGLMDED DGDDFATKLG  720
VSL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010680041.10.0PREDICTED: zinc finger CCCH domain-containing protein 17
STRINGXP_010680041.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.18e-09C3H family protein