PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Dca3474.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
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Family | NF-YB | ||||||||
Protein Properties | Length: 129aa MW: 12625.6 Da PI: 7.0894 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 57.5 | 3.3e-18 | 23 | 58 | 2 | 37 |
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqe 37 +eqdrflPianvsrimkk+lPanakiskdaketvqe Dca3474.1 23 KEQDRFLPIANVSRIMKKALPANAKISKDAKETVQE 58 79*********************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 2.56E-11 | 9 | 61 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 3.3E-16 | 20 | 58 | IPR009072 | Histone-fold |
Pfam | PF00808 | 8.8E-10 | 28 | 61 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 129 aa Download sequence Send to blast |
MADSDNDSGG RSHGGEHHLS SLKEQDRFLP IANVSRIMKK ALPANAKISK DAKETVQEEL 60 EGERTGNPIQ GNGGGGGGGS SGGVSSGGNG GGYGNGGGGS GGVNNGVMMM GHVIGQSGQG 120 YGGHGYGAK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G14540.1 | 2e-26 | nuclear factor Y, subunit B3 |