PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca34226.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

GRAS

Protein Properties

Length: 722aa MW: 81702.6 Da PI: 5.0273

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca34226.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	367	2.5e-112	349	719	1	373
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 l++l++ cA+ ++s+d + ++lL++++e++sp+gd+ qRla yf++AL+arl++++s+ly al++++t+ ++ + a+++f ++P+ k+s aN Dca34226.1 349 LRTLMILCAQSIASDDRRTSDELLKQIRENSSPEGDASQRLAYYFANALEARLSGTGSQLYTALNSKRTT---AADMIIAYQFFIRTCPFKKISIGFAN 444 5789999*********************************************************9999...9********************* PP GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196 ++Il+a+e+++++HiiDf+i +G+QWp L+q L++R+egpp+l iTg++ p++g +e++e+tg+rLa+++e+++vpfe+++ +a+++e+++l+eL++ Dca34226.1 445 HTILKAAENKSKLHIIDFGILYGFQWPLLIQRLSERTEGPPKLCITGIDLPQPGfrPSERVETTGKRLANYCERFKVPFEYHA-IAQKWETIKLNELKI 542 *************************************************9*************************.7********** PP GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreiv 295 +++ +++Vn+ ++ ++llde+ ++s+r++vL+l+++++P+++v+ + ++n++ F++rf eal +ys+lfd+++a++pr++ er + E+e+ grei+ Dca34226.1 543 ERDGVVIVNSLFRFKNLLDETIVVDSPRNAVLNLIRGIKPDIFVHGVVNGSYNAPFFVTRFREALFHYSTLFDMFDANAPRDDPERFMFEKEFYGREIM 641 *********************************************************************************************** PP GRAS 296 nvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 nvvaceg+er+er et+++W+ r ++aGF+ +l+ + ++ ++ ++ + + + ++ + ++++lgWk+r ++++SaW Dca34226.1 642 NVVACEGTERVERPETYKQWQVRNNRAGFRLQRLEPELLAKLSCKVKAQHHKDFVIDADGQWVLLGWKGRIIYAISAW 719 **********************************************888*********************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	64.266	323	700	IPR005202	Transcription factor GRAS
Pfam	PF03514	8.6E-110	349	719	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009410	Biological Process	response to xenobiotic stimulus
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005829	Cellular Component	cytosol

Sequence ? help Back to Top
Protein Sequence Length: 722 aa Download sequence Send to blast
MGSQFGELSD DFAEENSNNK DMYPGYYDES LYYANLFNYK DQSQNLSSLN LPSPLPDPTT 60 RFDLGSNLMA SSGVESSDDS DSDDVYKYIR ELLMEEDMEQ KPCMFHDSLA LQAAERPFYD 120 VLGTKYPPSP NQHPLIDDHF VNSPDDRSSN SANVGSGSGS GSTSSFNPPV SSWSQPSSLS 180 QSSFSPDMSS FGLSSWSTSM FSESESIMQF QKGMEEASKF LPKNSNIVVD FKNVDFPDET 240 KEVITSVKKE KDEQALDGSR GSKIHYREED EFDEGRSSKQ SAVSTEEAEL SEMFDRVLLC 300 APMKHEAHCT MGLDSEKGPV TQPDQIPGRE GKKDRPRKES NGKSNAVDLR TLMILCAQSI 360 ASDDRRTSDE LLKQIRENSS PEGDASQRLA YYFANALEAR LSGTGSQLYT ALNSKRTTAA 420 DMIIAYQFFI RTCPFKKISI GFANHTILKA AENKSKLHII DFGILYGFQW PLLIQRLSER 480 TEGPPKLCIT GIDLPQPGFR PSERVETTGK RLANYCERFK VPFEYHAIAQ KWETIKLNEL 540 KIERDGVVIV NSLFRFKNLL DETIVVDSPR NAVLNLIRGI KPDIFVHGVV NGSYNAPFFV 600 TRFREALFHY STLFDMFDAN APRDDPERFM FEKEFYGREI MNVVACEGTE RVERPETYKQ 660 WQVRNNRAGF RLQRLEPELL AKLSCKVKAQ HHKDFVIDAD GQWVLLGWKG RIIYAISAWV 720 PT

Sequence ? help Back to Top

Protein Sequence Length: 722 aa Download sequence Send to blast

MGSQFGELSD DFAEENSNNK DMYPGYYDES LYYANLFNYK DQSQNLSSLN LPSPLPDPTT  60
RFDLGSNLMA SSGVESSDDS DSDDVYKYIR ELLMEEDMEQ KPCMFHDSLA LQAAERPFYD  120
VLGTKYPPSP NQHPLIDDHF VNSPDDRSSN SANVGSGSGS GSTSSFNPPV SSWSQPSSLS  180
QSSFSPDMSS FGLSSWSTSM FSESESIMQF QKGMEEASKF LPKNSNIVVD FKNVDFPDET  240
KEVITSVKKE KDEQALDGSR GSKIHYREED EFDEGRSSKQ SAVSTEEAEL SEMFDRVLLC  300
APMKHEAHCT MGLDSEKGPV TQPDQIPGRE GKKDRPRKES NGKSNAVDLR TLMILCAQSI  360
ASDDRRTSDE LLKQIRENSS PEGDASQRLA YYFANALEAR LSGTGSQLYT ALNSKRTTAA  420
DMIIAYQFFI RTCPFKKISI GFANHTILKA AENKSKLHII DFGILYGFQW PLLIQRLSER  480
TEGPPKLCIT GIDLPQPGFR PSERVETTGK RLANYCERFK VPFEYHAIAQ KWETIKLNEL  540
KIERDGVVIV NSLFRFKNLL DETIVVDSPR NAVLNLIRGI KPDIFVHGVV NGSYNAPFFV  600
TRFREALFHY STLFDMFDAN APRDDPERFM FEKEFYGREI MNVVACEGTE RVERPETYKQ  660
WQVRNNRAGF RLQRLEPELL AKLSCKVKAQ HHKDFVIDAD GQWVLLGWKG RIIYAISAWV  720
PT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	1e-47	353	719	8	374	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010685736.1	0.0	PREDICTED: scarecrow-like protein 33
Swissprot	Q9XE58	0.0	SCL14_ARATH; Scarecrow-like protein 14
TrEMBL	A0A0K9RLR3	0.0	A0A0K9RLR3_SPIOL; Uncharacterized protein
STRING	XP_010685736.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	0.0	SCARECROW-like 14

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]