PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca3403.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family AP2
Protein Properties Length: 628aa    MW: 69874.4 Da    PI: 7.1858
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca3403.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP239.11.9e-12305361155
        AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                s+y+GV++++++gr++A+++d  ++  g  rk  + g ++t+++Aa+a++ a++k++g
  Dca3403.1 305 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqTRKGRQ-GGYDTEDKAARAYDLAALKYWG 361
                78*******************77776664335555.77***99*************98 PP
2AP247.35.2e-15404455155
        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Dca3403.1 404 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 455
                57****************988532...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.5E-9305361IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-15305371IPR016177DNA-binding domain
CDDcd000184.08E-19305369No hitNo description
SMARTSM003803.0E-22306375IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.6E-13306370IPR001471AP2/ERF domain
PROSITE profilePS5103217.754306369IPR001471AP2/ERF domain
PRINTSPR003674.0E-6307318IPR001471AP2/ERF domain
PfamPF008477.9E-10404455IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-17404463IPR016177DNA-binding domain
CDDcd000183.14E-25404465No hitNo description
PROSITE profilePS5103219.032405463IPR001471AP2/ERF domain
SMARTSM003801.5E-33405469IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-18405463IPR001471AP2/ERF domain
PRINTSPR003674.0E-6445465IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007276Biological Processgamete generation
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0042127Biological Processregulation of cell proliferation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 628 aa     Download sequence    Send to blast
MQNPCSSTSL TTSNSNFFTT SHDHLNFHQL NNNNNNNNNN TSNNNINISN FASNYYATSL  60
ETQQHGCNNN NNNNNNNGML YSLPFPIMPL KSDGSLCFPQ GIVLQAASNY STTSSTTTET  120
PKLENFFGHP HPRHHHHPIQ GGTHTHFEED YTTTTEVVQQ QQQQQQYPFY PPLFNTTKED  180
DHHHQWVQRT TTAYGGGGAV VGLGYGDMGP LRLTMSPGSQ SSCVTAPHQI TTTNNNNDNI  240
NTNNINNNSN NNNNNNGNNN NSNNNNGVVV VSECMGLESR KRVGGQGSKA IVHRKSLDTF  300
GQRTSQYRGV TRHRWTGRYE AHLWDNSCKK EGQTRKGRQG GYDTEDKAAR AYDLAALKYW  360
GPSTHINFPL ENYLQEVEEM KNMTRQEFVA HLRRRSSGFS RGASIYRGVT RHHQHGRWQA  420
RIGRVAGNKD LYLGTFSTQE EAAEAYDIAA IKFRGANAVT NFDIVRYDVD RIMASSTLLA  480
SELARRTKEL PQPRTDIETE TDKSGWKICL LENGPMGQND QAIISMAQNN VVLDSAQQEL  540
GGAHLSDPSS LVTSLSSSRE CSPEKNNDND NDNTNCLPLA FSMPPSATKL FATPGSNMSS  600
WINQPVELRP SSISLPQLPV FAAWADLH
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00088SELEXTransfer from AT4G37750Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010679674.10.0PREDICTED: AP2-like ethylene-responsive transcription factor ANT
TrEMBLA0A411EWL91e-173A0A411EWL9_CAMSI; AINTEGUMEN-LIKE protein
STRINGXP_010679674.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.11e-125AP2 family protein