PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Dca33335.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
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Family | Dof | ||||||||
Protein Properties | Length: 319aa MW: 35667 Da PI: 7.3253 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 110.9 | 6e-35 | 55 | 112 | 2 | 59 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknk 59 ++++lkcprC+stntkfCyynny+ sqPr+fCkaC+r+WtkGG+lrnvP Gggr++++ Dca33335.1 55 QHEQLKCPRCESTNTKFCYYNNYNKSQPRHFCKACKRHWTKGGTLRNVPEGGGRKNKR 112 57899**********************************************9976654 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02701 | 5.6E-31 | 57 | 111 | IPR003851 | Zinc finger, Dof-type |
ProDom | PD007478 | 3.0E-22 | 59 | 112 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 26.85 | 59 | 113 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 61 | 97 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 319 aa Download sequence Send to blast |
MGLSSKQVSS DGSDWNQALL EGAKTLEYPK MSSINRQHDQ QQQQQQQHQN QHQNQHEQLK 60 CPRCESTNTK FCYYNNYNKS QPRHFCKACK RHWTKGGTLR NVPEGGGRKN KRLKLSKAAT 120 STITTTTTTT ASTQLGGGIP TFKNNNINNN SKASFYENFV KQQQQQHQET SSITFNHNNK 180 GLLLNDGIFL PSTTTTMTSN LSSLCYDHQE IQGLPYTNIG GCLFESDNNI DDPCSVSSTI 240 TPILYNFTGG GGGDLANNNS SLNTNNDHHY QHSATTTTTT RTNDVMMGMS SNWGWDEFDK 300 FVSVEADLTI PWDDSDIKP |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010686557.1 | 2e-74 | PREDICTED: dof zinc finger protein DOF1.4 | ||||
TrEMBL | A0A0K9R3V0 | 7e-67 | A0A0K9R3V0_SPIOL; Uncharacterized protein | ||||
STRING | XP_010686557.1 | 9e-74 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28310.2 | 4e-28 | Dof family protein |