PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca33329.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family bHLH
Protein Properties Length: 399aa    MW: 43509.9 Da    PI: 6.8676
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca33329.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH512.5e-16214260455
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  hn+ ErrRRdriN+++  L++l+P++      K +Ka++L +++eY+k+Lq
  Dca33329.1 214 VHNQSERRRRDRINQKMKALQKLVPNS-----SKTDKASMLDEVIEYLKQLQ 260
                 6*************************8.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.7E-19208277IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.854210259IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.0E-19212268IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.2E-14214260IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.06E-17215264No hitNo description
SMARTSM003532.7E-18216265IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MHLICRSNFE VTELTWENGQ LAMHELGGMF PPSVSTTSSS SPKLTWEDDH GGGSGGVAGG  60
VGDTLESIVH QATYCNNNRQ VPNLMPEPNF GSVVASSGGK WGEKSGQIKI VGPAQTPGML  120
KKRTRSETEH HRGLTNNDHE SACASADAVF SIENNETTMM TWSYESPRSS TRTKTTNDED  180
SACHGGSENQ EEERETKGET GRSYPTRKGR AAAVHNQSER RRRDRINQKM KALQKLVPNS  240
SKTDKASMLD EVIEYLKQLQ AQVHMMSHAR FMPQIMMPLG IQQHLHQMSL LARMGMGHSL  300
GMGLAMPETT NIGPALLPPQ PIPSMIHPSQ VASTFVPPAF MVPQMMGPTQ LASSDHATSS  360
SAQLQDTYNT LLAQASCAAH FSSVFCSPFS FPFTDLFSS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1218223ERRRRD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021761552.11e-153transcription factor PIF7-like
TrEMBLA0A0K9QNE11e-144A0A0K9QNE1_SPIOL; Uncharacterized protein
STRINGXP_010678431.11e-148(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.16e-35bHLH family protein