PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca33230.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family MYB
Protein Properties Length: 409aa    MW: 45625 Da    PI: 10.4093
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca33230.2genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.57.1e-143074347
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +WT+eE+ l++ + +q G+g+W+ I+r + k+R++ q+ s+ qky
       Dca33230.2 30 PWTEEEHRLFLAGLNQVGKGDWRGISRNFVKKRSPTQVASHAQKY 74
                     8*******************************************9 PP

2Myb_DNA-binding42.81.3e-13216260347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ l++ + +q G+g+W+ I+r + k+R++ q+ s+ qky
       Dca33230.2 216 PWTEEEHRLFLVGLNQVGKGDWRGISRNFVKTRSPTQVASHAQKY 260
                      8*******************************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.1312379IPR017930Myb domain
SuperFamilySSF466894.38E-162579IPR009057Homeodomain-like
TIGRFAMsTIGR015571.6E-152677IPR006447Myb domain, plants
SMARTSM007172.4E-102777IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.3E-102974IPR009057Homeodomain-like
CDDcd001674.86E-93075No hitNo description
PfamPF002492.7E-103074IPR001005SANT/Myb domain
PROSITE profilePS5129417.246209265IPR017930Myb domain
SuperFamilySSF466891.12E-16211265IPR009057Homeodomain-like
TIGRFAMsTIGR015573.2E-15212263IPR006447Myb domain, plants
SMARTSM007175.6E-10213263IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-9215260IPR009057Homeodomain-like
PfamPF002491.6E-10216260IPR001005SANT/Myb domain
CDDcd001679.71E-9216261No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
GNNCHDSGYA SDDGIHASGG RNRERKRGVP WTEEEHRLFL AGLNQVGKGD WRGISRNFVK  60
KRSPTQVASH AQKYFLRRTN LNRRRHRSSL FDITTDTCGN NGHNARTCPD HTVTPSNYNT  120
NINTNTSNGN NGVMLFGVRL THSVAENSTA SPQRPIESSS LSGFRKCMSM NNLAQYEQQQ  180
QQQQQQGNNC HDSGYASDDG IHASGGRNRE RKRGVPWTEE EHRLFLVGLN QVGKGDWRGI  240
SRNFVKTRSP TQVASHAQKY FLRRTNLNRR RRRSSLFDIT TDTMTRSASA DQLHNLDTTF  300
QQNQVTNQPT LFSTSCTPTT LLPNLAKHDN SMRTTAPVPP FVKMADLNLN QSPSSSPASS  360
TSTNTTRERE LESFLSLKLE HAPSDEAESS GLSNFGGFNG NRDNTISVA
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor (PubMed:23888064, PubMed:24806884). Direct regulator of the transcription of peroxidase (Prxs) and reactive oxygen species (ROS)-related genes via the recognition of 5'-ATCACA-3' motif (PubMed:24806884). Binds to 5'-TATCCA-3' motif (TA box) and represses the activity of corresponding promoters (e.g. sugar response genes) (PubMed:25920996). Regulates hypocotyl elongation in response to darkness by enhancing auxin accumulation in a phytochrome-interacting factor (PIF) proteins-dependent manner. Promotes lateral roots formation (PubMed:23888064). Promotes cell expansion during leaves development via the modulation of cell wall-located Prxs (PubMed:24806884). Plays a critical role in developmentally regulated and dark-induced onset of leaf senescence by repressing the transcription of several genes involved in chloroplast function and responses to light and auxin. Promotes responses to auxin, abscisic acid (ABA), and ethylene (PubMed:25920996). {ECO:0000269|PubMed:23888064, ECO:0000269|PubMed:24806884, ECO:0000269|PubMed:25920996}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by CdCl(2) (PubMed:16463103). Accumulates in the dark (PubMed:23888064, PubMed:25920996). Diurnal expression pattern with maximal levels in the morning (at protein level). Specifically induced during leaf expansion (PubMed:24806884). Expressed in old and dark-treated leaves (PubMed:25920996). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:23888064, ECO:0000269|PubMed:24806884, ECO:0000269|PubMed:25920996}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021849899.11e-79transcription factor MYB1R1
SwissprotQ9LVS09e-46KUA1_ARATH; Transcription factor KUA1
TrEMBLA0A0K9R9Z72e-78A0A0K9R9Z7_SPIOL; Uncharacterized protein
STRINGXP_010683349.12e-78(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G70000.25e-54MYB_related family protein
Publications ? help Back to Top
  1. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]