PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Dca33230.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
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Family | MYB | ||||||||
Protein Properties | Length: 409aa MW: 45625 Da PI: 10.4093 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 43.5 | 7.1e-14 | 30 | 74 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ l++ + +q G+g+W+ I+r + k+R++ q+ s+ qky Dca33230.2 30 PWTEEEHRLFLAGLNQVGKGDWRGISRNFVKKRSPTQVASHAQKY 74 8*******************************************9 PP | |||||||
2 | Myb_DNA-binding | 42.8 | 1.3e-13 | 216 | 260 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ l++ + +q G+g+W+ I+r + k+R++ q+ s+ qky Dca33230.2 216 PWTEEEHRLFLVGLNQVGKGDWRGISRNFVKTRSPTQVASHAQKY 260 8*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 18.131 | 23 | 79 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.38E-16 | 25 | 79 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.6E-15 | 26 | 77 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 2.4E-10 | 27 | 77 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.3E-10 | 29 | 74 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.86E-9 | 30 | 75 | No hit | No description |
Pfam | PF00249 | 2.7E-10 | 30 | 74 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 17.246 | 209 | 265 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.12E-16 | 211 | 265 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.2E-15 | 212 | 263 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 5.6E-10 | 213 | 263 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-9 | 215 | 260 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.6E-10 | 216 | 260 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.71E-9 | 216 | 261 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 409 aa Download sequence Send to blast |
GNNCHDSGYA SDDGIHASGG RNRERKRGVP WTEEEHRLFL AGLNQVGKGD WRGISRNFVK 60 KRSPTQVASH AQKYFLRRTN LNRRRHRSSL FDITTDTCGN NGHNARTCPD HTVTPSNYNT 120 NINTNTSNGN NGVMLFGVRL THSVAENSTA SPQRPIESSS LSGFRKCMSM NNLAQYEQQQ 180 QQQQQQGNNC HDSGYASDDG IHASGGRNRE RKRGVPWTEE EHRLFLVGLN QVGKGDWRGI 240 SRNFVKTRSP TQVASHAQKY FLRRTNLNRR RRRSSLFDIT TDTMTRSASA DQLHNLDTTF 300 QQNQVTNQPT LFSTSCTPTT LLPNLAKHDN SMRTTAPVPP FVKMADLNLN QSPSSSPASS 360 TSTNTTRERE LESFLSLKLE HAPSDEAESS GLSNFGGFNG NRDNTISVA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor (PubMed:23888064, PubMed:24806884). Direct regulator of the transcription of peroxidase (Prxs) and reactive oxygen species (ROS)-related genes via the recognition of 5'-ATCACA-3' motif (PubMed:24806884). Binds to 5'-TATCCA-3' motif (TA box) and represses the activity of corresponding promoters (e.g. sugar response genes) (PubMed:25920996). Regulates hypocotyl elongation in response to darkness by enhancing auxin accumulation in a phytochrome-interacting factor (PIF) proteins-dependent manner. Promotes lateral roots formation (PubMed:23888064). Promotes cell expansion during leaves development via the modulation of cell wall-located Prxs (PubMed:24806884). Plays a critical role in developmentally regulated and dark-induced onset of leaf senescence by repressing the transcription of several genes involved in chloroplast function and responses to light and auxin. Promotes responses to auxin, abscisic acid (ABA), and ethylene (PubMed:25920996). {ECO:0000269|PubMed:23888064, ECO:0000269|PubMed:24806884, ECO:0000269|PubMed:25920996}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Slightly induced by CdCl(2) (PubMed:16463103). Accumulates in the dark (PubMed:23888064, PubMed:25920996). Diurnal expression pattern with maximal levels in the morning (at protein level). Specifically induced during leaf expansion (PubMed:24806884). Expressed in old and dark-treated leaves (PubMed:25920996). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:23888064, ECO:0000269|PubMed:24806884, ECO:0000269|PubMed:25920996}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021849899.1 | 1e-79 | transcription factor MYB1R1 | ||||
Swissprot | Q9LVS0 | 9e-46 | KUA1_ARATH; Transcription factor KUA1 | ||||
TrEMBL | A0A0K9R9Z7 | 2e-78 | A0A0K9R9Z7_SPIOL; Uncharacterized protein | ||||
STRING | XP_010683349.1 | 2e-78 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G70000.2 | 5e-54 | MYB_related family protein |
Publications ? help Back to Top | |||
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