PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca32408.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

HRT-like

Protein Properties

Length: 417aa MW: 46685.7 Da PI: 10.032

Description

HRT-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca32408.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HRT-like	54.5	1.9e-17	265	294	1	30
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmR 30 iCG++ +dGs+C ++Pv+gRKRC+ HKGm+ Dca32408.1 265 ICGMTASDGSICVKPPVEGRKRCATHKGMK 294 8****************************8 PP
2	HRT-like	48.5	1.5e-15	323	353	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 +CG++ +dGs C+r P +gRKRC eHKGmR+ Dca32408.1 323 VCGATQRDGSHCERLPLPGRKRCMEHKGMRV 353 7*****************************7 PP
3	HRT-like	54.3	2.2e-17	379	409	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 iCGv+l+dG++C+++P++gRKRC eHKGmRi Dca32408.1 379 ICGVHLDDGNCCTKKPAEGRKRCGEHKGMRI 409 8*****************************7 PP

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:2000033	Biological Process	regulation of seed dormancy process
GO:0097100	Molecular Function	supercoiled DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 417 aa Download sequence Send to blast
MFKPILTTTT TTTTTTTTTR LKREEFRRTK HDTAFSKWRV LIGPSDWADY EAQKEGAERY 60 RVGNLPELNR PGVYEIGIAV YATCLGRNVD AERVVVVYLG QADNVRSRLQ QYGRCGSHLV 120 YGGVDLFQQV FDRGFPIVYR WALIKSKTEA EKIEVQLLAR FDYAWNKLGN GSRRPVDILT 180 KIDVISSNTR KIPKIWKMLQ ALRDQKVGIT IKAEKLPLDN KPNLDTYDGE KLGLFGRVLK 240 FSRSRPCAVS PDPGTIVKDF NETVICGMTA SDGSICVKPP VEGRKRCATH KGMKLTRNAT 300 TKDTIIKDAD RENCSSDGTN NIVCGATQRD GSHCERLPLP GRKRCMEHKG MRVNQSKSKA 360 LNPKSLITVS LSNPSLVEIC GVHLDDGNCC TKKPAEGRKR CGEHKGMRID VYVSKLS

Sequence ? help Back to Top

Protein Sequence Length: 417 aa Download sequence Send to blast

MFKPILTTTT TTTTTTTTTR LKREEFRRTK HDTAFSKWRV LIGPSDWADY EAQKEGAERY  60
RVGNLPELNR PGVYEIGIAV YATCLGRNVD AERVVVVYLG QADNVRSRLQ QYGRCGSHLV  120
YGGVDLFQQV FDRGFPIVYR WALIKSKTEA EKIEVQLLAR FDYAWNKLGN GSRRPVDILT  180
KIDVISSNTR KIPKIWKMLQ ALRDQKVGIT IKAEKLPLDN KPNLDTYDGE KLGLFGRVLK  240
FSRSRPCAVS PDPGTIVKDF NETVICGMTA SDGSICVKPP VEGRKRCATH KGMKLTRNAT  300
TKDTIIKDAD RENCSSDGTN NIVCGATQRD GSHCERLPLP GRKRCMEHKG MRVNQSKSKA  360
LNPKSLITVS LSNPSLVEIC GVHLDDGNCC TKKPAEGRKR CGEHKGMRID VYVSKLS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010687447.1	1e-161	PREDICTED: protein EFFECTOR OF TRANSCRIPTION 2
TrEMBL	A0A0K9RRX0	1e-148	A0A0K9RRX0_SPIOL; Uncharacterized protein
STRING	XP_010687447.1	1e-160	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56780.1	9e-91	effector of transcription2