PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca32036.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

GRAS

Protein Properties

Length: 532aa MW: 58346.1 Da PI: 6.4584

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca32036.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	287.2	4.5e-88	160	531	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 ++ L+++A+a++s++ ++ +L+rl+++ +sp g+p+qR+a yf+eAL++ a ++ ++ +p++ s++++++++ a+k+fs vsP+ fs ++aN Dca32036.1 160 IDDLVRAAHAFESDNSNQLGMILSRLNQRlRSPVGKPLQRAAYYFKEALQQLYAT-ANTAVAPSRPTKLSSYDVVQTIRAMKAFSGVSPVTLFSAFAAN 257 578***********************99****************98888.55556666777777899********************** PP GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpeg.....ppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlelee 193 qa+leav+g+ +Hi+Dfdi+ G++W++++++L +++ + + lRiT++ ++e e + ++e+L++fA+el+++f++++++ ++e l +++ Dca32036.1 258 QAVLEAVDGAAFIHIVDFDIGFGGHWASFMRELVDKAVNttkltSIVLRITAIIPEE--FGVESKLVRENLSQFARELNLNFHIDFVLIPTFEILLFKS 354 ********************************944333435689***66..7788999***************************** PP GRAS 194 LrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe..adhnsesFlerflealeyysalfdsleaklpreseerikvErell 290 ++ gE++aV++ ++++ ++++ + +++++ ++++sP vvvvv++e +d +++sF++ f+ +e+y+ +++sl+ + + e + +E ++ Dca32036.1 355 VKFIDGEKIAVHFTPSVFHRFANNSRS--GISKFVAELRGVSPAVVVVVDKEvgMDVGTASFAASFIAGIEFYTGMLESLDIG-GGGGECVRRIETYVV 450 **********9988877444333..458****************65666********************99.778899999** PP GRAS 291 greivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +++iv +v ++ ++ + ++ +Wre++ +aG++ v +s++ qa++llr+ + g++v +++g+++l W+drpLv++SaW+ Dca32036.1 451 RPRIVAAVKAAARA---EGRRSTTWREAFVAAGLRVVGFSQFSDYQAECLLRRAQIGGFHVAKRHGEMMLFWHDRPLVVTSAWK 531 ****999888...566678**********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	36.94	133	511	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.6E-85	160	531	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0030154	Biological Process	cell differentiation
GO:0048831	Biological Process	regulation of shoot system development

Sequence ? help Back to Top
Protein Sequence Length: 532 aa Download sequence Send to blast
MKVPISPATT TATAILNAPN SNQSANYNEP TSVLDLRRSP SPGTKPILDS EINNHQHPPA 60 AELDNLEGWD SILSELGLND DNNNSKLLLS HFNNNNSSCN SDTQSLISQL LPDFPSSQPF 120 DLQASLPSDY ASPFPDFPHF GPSSDHISEC SHNTFGLDFI DDLVRAAHAF ESDNSNQLGM 180 ILSRLNQRLR SPVGKPLQRA AYYFKEALQQ LYATANTAVA PSRPTKLSSY DVVQTIRAMK 240 AFSGVSPVTL FSAFAANQAV LEAVDGAAFI HIVDFDIGFG GHWASFMREL VDKAVNTTKL 300 TSIVLRITAI IPEEFGVESK LVRENLSQFA RELNLNFHID FVLIPTFEIL LFKSVKFIDG 360 EKIAVHFTPS VFHRFANNSR SGISKFVAEL RGVSPAVVVV VDKEVGMDVG TASFAASFIA 420 GIEFYTGMLE SLDIGGGGGE CVRRIETYVV RPRIVAAVKA AARAEGRRST TWREAFVAAG 480 LRVVGFSQFS DYQAECLLRR AQIGGFHVAK RHGEMMLFWH DRPLVVTSAW KC

Sequence ? help Back to Top

Protein Sequence Length: 532 aa Download sequence Send to blast

MKVPISPATT TATAILNAPN SNQSANYNEP TSVLDLRRSP SPGTKPILDS EINNHQHPPA  60
AELDNLEGWD SILSELGLND DNNNSKLLLS HFNNNNSSCN SDTQSLISQL LPDFPSSQPF  120
DLQASLPSDY ASPFPDFPHF GPSSDHISEC SHNTFGLDFI DDLVRAAHAF ESDNSNQLGM  180
ILSRLNQRLR SPVGKPLQRA AYYFKEALQQ LYATANTAVA PSRPTKLSSY DVVQTIRAMK  240
AFSGVSPVTL FSAFAANQAV LEAVDGAAFI HIVDFDIGFG GHWASFMREL VDKAVNTTKL  300
TSIVLRITAI IPEEFGVESK LVRENLSQFA RELNLNFHID FVLIPTFEIL LFKSVKFIDG  360
EKIAVHFTPS VFHRFANNSR SGISKFVAEL RGVSPAVVVV VDKEVGMDVG TASFAASFIA  420
GIEFYTGMLE SLDIGGGGGE CVRRIETYVV RPRIVAAVKA AARAEGRRST TWREAFVAAG  480
LRVVGFSQFS DYQAECLLRR AQIGGFHVAK RHGEMMLFWH DRPLVVTSAW KC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	2e-26	141	530	1	378	Protein SCARECROW
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010667697.1	0.0	PREDICTED: scarecrow-like protein 15
TrEMBL	A0A0J8B5W8	0.0	A0A0J8B5W8_BETVU; Uncharacterized protein
STRING	XP_010667697.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36710.1	1e-111	GRAS family protein