PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca31962.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

C3H

Protein Properties

Length: 338aa MW: 36054 Da PI: 8.6865

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca31962.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	32.8	1.2e-10	6	27	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 lCr+f+r G C+yGd+CkF H+ Dca31962.1 6 DLCRNFQR-GSCHYGDKCKFLHS 27 79****.***********7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	15.901	2	29	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	2.49E-6	3	30	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	3.9E-5	3	28	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.9E-8	6	27	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.5E-9	6	30	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 338 aa Download sequence Send to blast
MSLRKDLCRN FQRGSCHYGD KCKFLHSNQQ QQKPNAFGFG SQTNAQQHKP NPFGFGVQNS 60 GPAAGSGGFK VSVLAFLCEI IMISTILHPF ENKWVRPGQS TNQSQGTQSQ SAANHECTDP 120 AVCKRIIAED FQNERPLWKL TCYGHYKQPS TPSNNAFAPS QQSTPSNNAF APFQGSGPIG 180 STSVPSGLFG TQVPTQTAGN PFAAQTSGTS FAVPTTGSPF ASNMAGFGNG FMNSQGSQAP 240 LQTSGNPFAS NISPFGNSGF GTQGNNMSPS LPTTQQQIQT PAFGQPSMLA NGLSNSIPTE 300 QRTLVQKETV PADASIWAKA EWKLGEIPEQ PPPPEYVR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
STRING	XP_010669635.1	2e-47	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75340.1	3e-32	C3H family protein