PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca31870.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family NAC
Protein Properties Length: 438aa    MW: 49673.8 Da    PI: 4.8752
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca31870.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM165.32.2e-51101371127
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 
                 lp GfrF+Ptd el+++yL+ k++gk++++ ++i+e+di++vePwdLp+  ++k++++ew+fF++rd+kya++ r+nrat++gyWkatgkd++++s++ 
  Dca31870.1  10 LPLGFRFKPTDVELIDHYLRLKINGKHNQV-SCIQEIDICSVEPWDLPAlsAIKTQDHEWFFFCPRDRKYASSLRSNRATEKGYWKATGKDRTIKSRRM 107
                 699************************999.89***************4458899999***************************************** PP

         NAM  98 elvglkktLvfykgrapkgektdWvmheyr 127
                  l+g+kktLvfy+grapkg++t+Wv+heyr
  Dca31870.1 108 GLIGTKKTLVFYEGRAPKGKRTSWVIHEYR 137
                 *****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.71E-557161IPR003441NAC domain
PROSITE profilePS5100553.85910161IPR003441NAC domain
PfamPF023651.8E-2511137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MGTLGKFEEL PLGFRFKPTD VELIDHYLRL KINGKHNQVS CIQEIDICSV EPWDLPALSA  60
IKTQDHEWFF FCPRDRKYAS SLRSNRATEK GYWKATGKDR TIKSRRMGLI GTKKTLVFYE  120
GRAPKGKRTS WVIHEYRPTL QELDGTNPGQ EAYILCRLFK KDDDLKQDEI DDIPNIYVLE  180
NDASAQNQTS TLVFQDDLRS EAAGVQASPV SVEQPVMQPE AAAGDIDSDS SFNIEEYINF  240
SCQSPHSSEV DTMRNADLMA CKKESVTENE SWPKMQVRGV QPMNFLQQQE TASRRSYLSA  300
NFNENDDLDT IPSDEDIFSI DELISTPPDA EDEKLVVNGE GDFDTGIVLK NRPSKTPESR  360
GKFNMQGTAP QRIRLRRFSF KSFNAEKHDR SLSEEVSLQS GVDFPNRKCS IVLVFILAFL  420
FMACIGLWTT QKDGSPVS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A5e-391016715174Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021725711.11e-101NAC domain-containing protein 14-like
TrEMBLA0A1B2RWD51e-103A0A1B2RWD5_9CARY; NAC transcription factor 7
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.39e-81NAC transcription factor-like 9