PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca31716.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family bHLH
Protein Properties Length: 573aa    MW: 63956.2 Da    PI: 6.4474
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca31716.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.91e-14383430355
                 HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 ++h  +ErrRR+++N++f++Lr+l+P+       K +K++iL  ++ Y+k+L+
  Dca31716.1 383 TNHVLAERRRREKVNERFSTLRSLIPSV-----SKADKISILDDTIAYLKELE 430
                 68999**********************6.....4****************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.6E-3514163IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.015380429IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-18383440IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.36E-17383442IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.67E-14383434No hitNo description
PfamPF000106.4E-12383430IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.3E-17386435IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009957Biological Processepidermal cell fate specification
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 573 aa     Download sequence    Send to blast
MADDSPFKRR DEILKSQLAA AVRSVHWSYA IFWSPSSMES RVLQWGDGYY NGGIKTRRTI  60
LSMDLKSDDQ TVSQRSDQLR ELYQSLLSAS NNSKSNQIRR PLAALSPEDL TNVEWFYLVC  120
MSFVFNVGQG LPGKCLASGQ PIWLCDAHLV DTSVFSRSLL AKVEEDLNII QHVRSFLENS  180
CVTVDAFLPS LLQGEDMELL SPTQSGSSGG VDLIQPLSDL LLFQGLSGVI PDDQLSNCLH  240
TSMASSDCVS QAVTNPENLP PDPKPELQYV NKDRVQNSNL QGRNGRSDYL IGEDLHYQNV  300
LSSLFKKSDH GFLQQSDRNL DKKSNFVCWT KGGDQNDRLS EGMSQYMLKK ILFEVPLMHA  360
HLAEPKEGSA RKEESCKQDA LNTNHVLAER RRREKVNERF STLRSLIPSV SKADKISILD  420
DTIAYLKELE RRVEDLESCQ KSPSVDTRKK RKTVDAEEGI SDNYGSDINE GAKKKTRKAK  480
EMKGVQQATR DSVVDNTITV SMADKETLID ISCPWRETLL LQIIDAMSSL HLNSQSVHSS  540
TVDGTLSLKI QSKGTSVSAG VITQTLLRVI KNS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1388393ERRRRE
2389394RRRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012086894.11e-157transcription factor GLABRA 3 isoform X3
STRINGEOY247501e-155(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63650.31e-123bHLH family protein