PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca31428.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family MYB
Protein Properties Length: 360aa    MW: 40327.6 Da    PI: 6.9207
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca31428.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding569.1e-181562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++l+ +++++G g+W++ + + g+ R++k+c++rw +yl
       Dca31428.1 15 KGPWTPEEDQKLLAYIQEHGHGNWRALPLRAGLQRCGKSCRLRWTNYL 62
                     79********************************************97 PP
2Myb_DNA-binding537.8e-1768113148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+++ +E++ +++++++lG++ W++Ia +++ +Rt++++k++w+++l
       Dca31428.1  68 RGKFSLQEEQTIIQLHALLGNR-WSAIATHLP-KRTDNEIKNYWNTHL 113
                      89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-24765IPR009057Homeodomain-like
PROSITE profilePS5129418.2981062IPR017930Myb domain
SuperFamilySSF466895.62E-3111109IPR009057Homeodomain-like
SMARTSM007171.8E-141464IPR001005SANT/Myb domain
PfamPF002491.4E-161562IPR001005SANT/Myb domain
CDDcd001671.34E-111762No hitNo description
PROSITE profilePS5129425.89163117IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.6E-2666117IPR009057Homeodomain-like
SMARTSM007171.2E-1667115IPR001005SANT/Myb domain
PfamPF002494.2E-1668113IPR001005SANT/Myb domain
CDDcd001672.49E-1170113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000902Biological Processcell morphogenesis
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MGRSPCCENK MGLKKGPWTP EEDQKLLAYI QEHGHGNWRA LPLRAGLQRC GKSCRLRWTN  60
YLRPDIKRGK FSLQEEQTII QLHALLGNRW SAIATHLPKR TDNEIKNYWN THLKKRLTKM  120
GIDPVTHKPR NDTLVPVSEG GPQQCKNVAN LSHMAQWESA RLEAEARLAR QSKLRSNAAS  180
FTSWPGNNNI GAGGIGLLGM DSPTTTLSFI GNGGAVTEFI RHHHTNDSNY TNCDHQGIIK  240
EENNQQEWNS MSFNQMTLSI DEGGHDKDGV QDEEDDHPST NRDFIEGFTE LLLSTTTTTT  300
TTTTTPRTSN SSGKSVVHDD QGTIINGDSS ESSDRYEDNK NYWNSILNLV ESSPLHSSVF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-25131175108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the control of epidermal cell morphogenesis in petals. Promotes unidirectional cell expansion once outgrowth has been initiated (PubMed:17376813). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). Functions as a major regulator of cuticle formation in vegetative organs by regulating the cuticle biosynthesis genes CYP86A8/LCR and CER1 (PubMed:24169067). {ECO:0000269|PubMed:17376813, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010670239.11e-132PREDICTED: transcription factor MYB36-like
SwissprotQ9LXF11e-107MYB16_ARATH; Transcription factor MYB16
TrEMBLF6H5V11e-133F6H5V1_VITVI; Uncharacterized protein
STRINGVIT_14s0108g01080.t011e-134(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15310.13e-98myb domain protein 16
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Huang BH, et al.
    Positive selection and functional divergence of R2R3-MYB paralogous genes expressed in inflorescence buds of Scutellaria species (Labiatae).
    Int J Mol Sci, 2015. 16(3): p. 5900-21
    [PMID:25782156]
  4. Cui F, et al.
    Dissecting Abscisic Acid Signaling Pathways Involved in Cuticle Formation.
    Mol Plant, 2016. 9(6): p. 926-38
    [PMID:27060495]