PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca31000.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family GRAS
Protein Properties Length: 540aa    MW: 61294.2 Da    PI: 6.1373
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca31000.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS423.22.2e-1291705401374
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                 l+++L+ cA+av+++d++ a  lL +ls+++s  g p++Rlaay++e+L+arl  s+ ++yk+l++ + +   ss+ l+++++++e +P+++f+++ aN
  Dca31000.1 170 LKQVLYLCAQAVADNDFSVAPCLLDELSKRVSVCGAPFERLAAYMLEGLRARLEFSGFTIYKKLRCDQPT---SSQLLSYMHVLYEFCPYYQFAYMSAN 265
                 5799*****************************************************************9...9************************* PP

        GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
                 + I e++++e+ +HiiDf+i +G+QW+ Llq+La+Rp+ pp +RiTgv++p+s+  +   le +g+rL+k Ae+ g+pfef++ +a +  ++e e+Lrv
  Dca31000.1 266 SIIQEELHNENSIHIIDFQIAMGTQWMLLLQSLAKRPGRPPFVRITGVDDPQSFfaRGGGLEVVGQRLSKCAESNGIPFEFHA-AAMSGGEVERENLRV 363
                 *****************************************************99999*************************.8999*********** PP

        GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreiv 295
                 +pgEalaVn+ ++lh+++desv+++++rd++L+lvkslsP+vv++veqe+++n+++F++rfle+l+yy+a+f+s+++ l+r+++ ri+ E+++l+r+iv
  Dca31000.1 364 QPGEALAVNFPYMLHHMPDESVNTTNHRDRLLRLVKSLSPRVVTIVEQESNTNTPPFMQRFLETLDYYTAMFESIDVALARDDKRRINAEQHCLARDIV 462
                 *************************************************************************************************** PP

        GRAS 296 nvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 n++ace++er erhe ++kWr+rl++aGF+++pls  + ++++ l++k++++ yr+ee +g+l+lgWk+r L + SaWr
  Dca31000.1 463 NMIACENEERMERHEPFGKWRARLSMAGFEQMPLSMGVKNEMRVLMQKFNQN-YRLEEWQGALYLGWKQRGLATSSAWR 540
                 **************************************************66.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098563.432144521IPR005202Transcription factor GRAS
PfamPF035147.7E-127170540IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
Sequence ? help Back to Top
Protein Sequence    Length: 540 aa     Download sequence    Send to blast
MQTSKNHHGA SGMHGLLYQQ PPEMTPYFAY KSVRPDDAGN GTQLSFQEYS QEYFTLDSAP  60
PISMYNVYDS PSDVSTLSNR SQFSPHASHT YVSDSHHSSD NNGSPFSGSS MVGDSSEIES  120
WLRKVEQSLL GPDSNVADYH YCALNHKGGN VETTSTTLKQ VMDMVPRMEL KQVLYLCAQA  180
VADNDFSVAP CLLDELSKRV SVCGAPFERL AAYMLEGLRA RLEFSGFTIY KKLRCDQPTS  240
SQLLSYMHVL YEFCPYYQFA YMSANSIIQE ELHNENSIHI IDFQIAMGTQ WMLLLQSLAK  300
RPGRPPFVRI TGVDDPQSFF ARGGGLEVVG QRLSKCAESN GIPFEFHAAA MSGGEVEREN  360
LRVQPGEALA VNFPYMLHHM PDESVNTTNH RDRLLRLVKS LSPRVVTIVE QESNTNTPPF  420
MQRFLETLDY YTAMFESIDV ALARDDKRRI NAEQHCLARD IVNMIACENE ERMERHEPFG  480
KWRARLSMAG FEQMPLSMGV KNEMRVLMQK FNQNYRLEEW QGALYLGWKQ RGLATSSAWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A9e-5817753926378Protein SCARECROW
5b3h_A8e-5817753925377Protein SCARECROW
5b3h_D8e-5817753925377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as a positive regulator of continuous red light signals downstream of phytochrome B (phyB). Required for the regulation of hypocotyl elongation during de-etiolation. May be required to modulate phytochrome A (phyA) signal transduction in a phyB-independent way. {ECO:0000269|PubMed:16680434}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By osmotic and cold stresses, and UV-A/B. {ECO:0000269|PubMed:16680434}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010686653.10.0PREDICTED: scarecrow-like protein 21
SwissprotQ9M0M50.0SCL13_ARATH; Scarecrow-like protein 13
TrEMBLA0A0K9RLD00.0A0A0K9RLD0_SPIOL; Uncharacterized protein
STRINGXP_010686653.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17230.10.0SCARECROW-like 13