PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca30875.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

Trihelix

Protein Properties

Length: 392aa MW: 44068.3 Da PI: 4.7631

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca30875.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	49.7	9.8e-16	155	235	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 Wt++e aL++a ++ +l+r++l +W+evs+k+ re+ +er+ qC+++++ l+krykk+k++ ++ s++ +f++++ Dca30875.1 155 WTERESFALLDAWGDRFLKLGRKSLSSDDWREVSDKVsRETNVERTDSQCRNRLDVLKKRYKKEKASGGD-----ASNWIFFRRMD 235 ***********************************99999*********************998.....479****97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	5.1E-22	153	236	No hit	No description
Gene3D	G3DSA:1.10.10.60	7.6E-4	154	219	IPR009057	Homeodomain-like
PROSITE profile	PS50090	6.098	154	207	IPR017877	Myb-like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 392 aa Download sequence Send to blast
MDGSESDLRH ETKPLSVNNQ QGHSTSIRLK VPPRNPAMHS RVISQSTVGC NGDDVEEKET 60 SGDKVEKVGG VRIIGKDNYD DVDEDDVSDD EDDEETAEED NNNDGNDGIG LPQKKRKMKD 120 SVSNYELVPR VRTPPAHVAA KSETSSVGRG IGANWTERES FALLDAWGDR FLKLGRKSLS 180 SDDWREVSDK VSRETNVERT DSQCRNRLDV LKKRYKKEKA SGGDASNWIF FRRMDFLLNS 240 PAQQRPSSSL SCGVDSGGYV FVNPKVYLNR ANGLDEMKDS PENSESSKND QDDSLNKVVP 300 EGNRKRGRKS EGSCFQLLAD SIQKFSDIYE DIEISRRKQM VDIENMRMDF QRQIETQTRQ 360 ILERAQAEIM NLRQQGGDAD ENGASGENCS ER

Sequence ? help Back to Top

Protein Sequence Length: 392 aa Download sequence Send to blast

MDGSESDLRH ETKPLSVNNQ QGHSTSIRLK VPPRNPAMHS RVISQSTVGC NGDDVEEKET  60
SGDKVEKVGG VRIIGKDNYD DVDEDDVSDD EDDEETAEED NNNDGNDGIG LPQKKRKMKD  120
SVSNYELVPR VRTPPAHVAA KSETSSVGRG IGANWTERES FALLDAWGDR FLKLGRKSLS  180
SDDWREVSDK VSRETNVERT DSQCRNRLDV LKKRYKKEKA SGGDASNWIF FRRMDFLLNS  240
PAQQRPSSSL SCGVDSGGYV FVNPKVYLNR ANGLDEMKDS PENSESSKND QDDSLNKVVP  300
EGNRKRGRKS EGSCFQLLAD SIQKFSDIYE DIEISRRKQM VDIENMRMDF QRQIETQTRQ  360
ILERAQAEIM NLRQQGGDAD ENGASGENCS ER

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021731967.1	1e-114	trihelix transcription factor ASIL1-like
Refseq	XP_021731968.1	1e-114	trihelix transcription factor ASIL1-like
Refseq	XP_021731969.1	1e-114	trihelix transcription factor ASIL1-like
TrEMBL	A0A067KQH9	3e-99	A0A067KQH9_JATCU; Uncharacterized protein
STRING	XP_010691286.1	1e-108	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24490.1	2e-62	Trihelix family protein